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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208171 (43 seq.)
>W1711624590
MPHK01000010
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
110107
110023
-
Leu
CAA
[ENA]
¡û
>W1711767458
MUZV01000007
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
55719
55803
+
Leu
CAA
[ENA]
¡û
>W1711947472
NBOD01000002
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
564350
564266
-
Leu
CAA
[ENA]
¡û
>W1711947729
NBOG01000006
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
419398
419314
-
Leu
CAA
[ENA]
¡û
>C171034505
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
1329121
1329037
-
Leu
CAA
-
¡û
>C171108334
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
189199
189283
+
Leu
CAA
-
¡û
>WENV182540216
OJAF01000246
[OJAF] seawater metagenome; Sea water
6127
6211
+
Leu
CAA
[ENA]
¡û
>WENV182541984
OJAV01000148
[OJAV] seawater metagenome; Sea water
30342
30258
-
Leu
CAA
[ENA]
¡û
>WENV182547436
OJBS01005681
[OJBS] seawater metagenome; Sea water
889
973
+
Leu
CAA
[ENA]
¡û
>WENV182549948
OJBZ01000708
[OJBZ] seawater metagenome; Sea water
4309
4393
+
Leu
CAA
[ENA]
¡û
>WENV182550177
OJBZ01008231
[OJBZ] seawater metagenome; Sea water
1149
1065
-
Leu
CAA
[ENA]
¡û
>WENV182559949
OJDR01000003
[OJDR] seawater metagenome; Sea water
9238
9154
-
Leu
CAA
[ENA]
¡û
>WENV182567109
OJEN01002623
[OJEN] seawater metagenome; Sea water
2332
2248
-
Leu
CAA
[ENA]
¡û
>WENV182585164
OJHH01002595
[OJHH] seawater metagenome; Sea water
2516
2432
-
Leu
CAA
[ENA]
¡û
>WENV182587974
OJHO01000475
[OJHO] seawater metagenome; Sea water
8857
8773
-
Leu
CAA
[ENA]
¡û
>WENV170646794
JQIA01003301
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1027
943
-
Leu
CAA
[ENA]
¡û
>C181169943
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
3680329
3680245
-
Leu
CAA
-
¡û
>C191128356
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
4103965
4103881
-
Leu
CAA
-
¡û
>W1920000374
MCVI01000094
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
50969
50885
-
Leu
CAA
[ENA]
¡û
>W1910676711
MCTV01000001
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
154068
153984
-
Leu
CAA
[ENA]
¡û
>W1910676932
MCTY01000125
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
50111
50027
-
Leu
CAA
[ENA]
¡û
>W1910679480
MCVG01000058
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
82185
82269
+
Leu
CAA
[ENA]
¡û
>W2010689417
JACGVA010000068
Gammaproteobacteria
Colwellia sp. MB3u-8 [JACGVA]
473393
473477
+
Leu
CAA
[ENA]
¡û
>W2010689474
JACGVB010000086
Gammaproteobacteria
Colwellia sp. MB3u-70 [JACGVB]
656782
656866
+
Leu
CAA
[ENA]
¡û
>W2010689520
JACGVC010000035
Gammaproteobacteria
Colwellia sp. MB3u-45 [JACGVC]
90494
90578
+
Leu
CAA
[ENA]
¡û
>W2010689615
JACGVD010000066
Gammaproteobacteria
Colwellia sp. MB3u-43 [JACGVD]
65230
65314
+
Leu
CAA
[ENA]
¡û
>W2010689660
JACGVE010000068
Gammaproteobacteria
Colwellia sp. MB3u-4 [JACGVE]
230404
230488
+
Leu
CAA
[ENA]
¡û
>W2010689797
JACGVF010000100
Gammaproteobacteria
Colwellia sp. MB02u-9 [JACGVF]
1630
1546
-
Leu
CAA
[ENA]
¡û
>W2010689854
JACGVG010000037
Gammaproteobacteria
Colwellia sp. MB02u-6 [JACGVG]
238846
238930
+
Leu
CAA
[ENA]
¡û
>W2010689929
JACGVH010000052
Gammaproteobacteria
Colwellia sp. MB02u-19 [JACGVH]
1424
1340
-
Leu
CAA
[ENA]
¡û
>W2010689975
JACGVI010000048
Gammaproteobacteria
Colwellia sp. MB02u-18 [JACGVI]
1424
1340
-
Leu
CAA
[ENA]
¡û
>W2010690070
JACGVJ010000053
Gammaproteobacteria
Colwellia sp. MB02u-12 [JACGVJ]
1424
1340
-
Leu
CAA
[ENA]
¡û
>W2010690155
JACGVK010000133
Gammaproteobacteria
Colwellia sp. MB02u-10 [JACGVK]
1902
1818
-
Leu
CAA
[ENA]
¡û
>W2010690223
JACGVL010000057
Gammaproteobacteria
Colwellia sp. MB02u-1 [JACGVL]
1424
1340
-
Leu
CAA
[ENA]
¡û
>W2010691174
JACGWA010000001
Gammaproteobacteria
Colwellia sp. BRX10-3 [JACGWA]
566080
565996
-
Leu
CAA
[ENA]
¡û
>W2010810441
MCTV01000001
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
154068
153984
-
Leu
CAA
[ENA]
¡û
>W2010810663
MCTY01000125
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
50111
50027
-
Leu
CAA
[ENA]
¡û
>W2010813215
MCVG01000058
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
82185
82269
+
Leu
CAA
[ENA]
¡û
>W2010813430
MCVI01000094
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
50969
50885
-
Leu
CAA
[ENA]
¡û
>W2012105466
VOLS01000031
Gammaproteobacteria
Colwellia sp. C1TZA3 [VOLS]
45076
45160
+
Leu
CAA
[ENA]
¡û
>C231046481
CP040755
Gammaproteobacteria
Colwellia sp. M166 [CP040755]
1920238
1920154
-
Leu
CAA
-
¡û
>C241061714
CP041783
Gammaproteobacteria
Shewanella donghaensis LT17 [CP041783]
3985417
3985501
+
Leu
CAA
-
¡û
>WENV077973
AAFY01000649
Fossil microbial community from Whale Fall (Santa Cruz Basin)
330
416
+
Leu
CAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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