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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208382 (57 seq.)
>W131219604
ATYS01000003
Gammaproteobacteria
Budvicia aquatica DSM 5075 = ATCC 35567 [ATYS]
158914
158838
-
Arg
ACG
[ENA]
¡û
>W131219602
ATYS01000003
Gammaproteobacteria
Budvicia aquatica DSM 5075 = ATCC 35567 [ATYS]
159212
159136
-
Arg
ACG
[ENA]
¡û
>W131219603
ATYS01000003
Gammaproteobacteria
Budvicia aquatica DSM 5075 = ATCC 35567 [ATYS]
159063
158987
-
Arg
ACG
[ENA]
¡û
>WENV180042122
LNFX01000035
[LNFX] marine sediment metagenome; antarctic beach sand mud
4590
4514
-
Arg
ACG
[ENA]
¢þ
>WENV180042207
LNFX01004612
[LNFX] marine sediment metagenome; antarctic beach sand mud
92
16
-
Arg
ACG
[ENA]
¢þ
>W141191393
AYOZ01000009
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
73610
73686
+
Arg
ACG
[ENA]
¡û
>W141191395
AYOZ01000009
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
73882
73958
+
Arg
ACG
[ENA]
¡û
>W141284716
JAMB01000027
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
62
138
+
Arg
ACG
[ENA]
¡û
>W141284717
JAMB01000027
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
194
270
+
Arg
ACG
[ENA]
¡û
>WENV183745646
POVV01000208
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
27118
27042
-
Arg
ACG
[ENA]
¢þ
>WENV183745647
POVV01000208
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
26969
26893
-
Arg
ACG
[ENA]
¢þ
>WENV183745648
POVV01000208
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
26820
26744
-
Arg
ACG
[ENA]
¢þ
>C181175863
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
2544553
2544477
-
Arg
ACG
-
¡û
>C181175864
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
2544396
2544320
-
Arg
ACG
-
¡û
>C181175865
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
2544240
2544164
-
Arg
ACG
-
¡û
>C191039820
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3217086
3217010
-
Arg
ACG
-
¡û
>C191039821
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3216955
3216879
-
Arg
ACG
-
¡û
>C191039822
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3216819
3216743
-
Arg
ACG
-
¡û
>C191130389
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
2708406
2708330
-
Arg
ACG
-
¡û
>C191130390
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
2708248
2708172
-
Arg
ACG
-
¡û
>C191130391
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
2708091
2708015
-
Arg
ACG
-
¡û
>C191214329
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
1205358
1205434
+
Arg
ACG
-
¡û
>C191214330
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
1205509
1205585
+
Arg
ACG
-
¡û
>C191214331
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
1205790
1205866
+
Arg
ACG
-
¡û
>W1910230287
FOLW01000002
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
65908
65984
+
Arg
ACG
[ENA]
¡û
>W1910230288
FOLW01000002
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
66059
66135
+
Arg
ACG
[ENA]
¡û
>W1910230289
FOLW01000002
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
66340
66416
+
Arg
ACG
[ENA]
¡û
>W1910584850
JYBL01000028
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
4907
4831
-
Arg
ACG
[ENA]
¡û
>W1910584851
JYBL01000028
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
4772
4696
-
Arg
ACG
[ENA]
¡û
>W1910584852
JYBL01000028
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
4641
4565
-
Arg
ACG
[ENA]
¡û
>W1910914891
NHTT01000015
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
4937
4861
-
Arg
ACG
[ENA]
¡û
>W1910914892
NHTT01000015
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
4802
4726
-
Arg
ACG
[ENA]
¡û
>W1910914893
NHTT01000015
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
4671
4595
-
Arg
ACG
[ENA]
¡û
>W1911573065
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
2594142
2594218
+
Arg
ACG
[ENA]
¡û
>W1911573066
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
2594291
2594367
+
Arg
ACG
[ENA]
¡û
>W1911573067
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
2594440
2594516
+
Arg
ACG
[ENA]
¡û
>W1810606226
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
228298
228374
+
Arg
ACG
[ENA]
¡û
>W1810606227
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
228432
228508
+
Arg
ACG
[ENA]
¡û
>W1810606228
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
228571
228647
+
Arg
ACG
[ENA]
¡û
>W1810625276
QHJF01000037
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
4765
4689
-
Arg
ACG
[ENA]
¡û
>W1810625278
QHJF01000038
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
461
385
-
Arg
ACG
[ENA]
¡û
>W1810625279
QHJF01000038
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
321
245
-
Arg
ACG
[ENA]
¡û
>W1810625280
QHJF01000038
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
183
107
-
Arg
ACG
[ENA]
¡û
>W1810676278
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
149139
149215
+
Arg
ACG
[ENA]
¡û
>W1810676279
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
149270
149346
+
Arg
ACG
[ENA]
¡û
>W1810676280
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
149406
149482
+
Arg
ACG
[ENA]
¡û
>W1810721713
QNSE01000012
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
5023
4947
-
Arg
ACG
[ENA]
¡û
>W1810721714
QNSE01000012
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
4886
4810
-
Arg
ACG
[ENA]
¡û
>W1810721715
QNSE01000012
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
4749
4673
-
Arg
ACG
[ENA]
¡û
>W1810759733
QPJQ01000036
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
44972
45048
+
Arg
ACG
[ENA]
¡û
>W1810759734
QPJQ01000036
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
45104
45180
+
Arg
ACG
[ENA]
¡û
>W1810759735
QPJQ01000036
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
45240
45316
+
Arg
ACG
[ENA]
¡û
>W1810885387
QUNG01000024
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
1881
1805
-
Arg
ACG
[ENA]
¡û
>W1810885388
QUNG01000024
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
1747
1671
-
Arg
ACG
[ENA]
¡û
>W1810885389
QUNG01000024
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
1620
1544
-
Arg
ACG
[ENA]
¡û
>W1710583980
FQVF01000015
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
5106
5030
-
Arg
ACG
[ENA]
¡û
>W1710583981
FQVF01000015
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
4970
4894
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK