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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208459 (54 seq.)
>W1711102630
LTNW01000060
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
64145
64069
-
Arg
CCG
[ENA]
¡û
>W1711108830
LTUC01000054
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
78076
78150
+
Arg
CCG
[ENA]
¡û
>W1711186542
LWOH01000040
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
14265
14189
-
Arg
CCG
[ENA]
¡û
>W1711186929
LWOP01000059
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
78517
78593
+
Arg
CCG
[ENA]
¡û
>W1711186976
LWOR01000071
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
88520
88594
+
Arg
CCG
[ENA]
¡û
>W1711208398
LXGG01000012
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
177402
177478
+
Arg
CCG
[ENA]
¡û
>W1711482554
MKAX01000239
Actinomycetota
Corynebacterium sp. BCW_4722 concisus [MKAX]
87132
87056
-
Arg
CCG
[ENA]
¡û
>W1711517400
MLJM01000075
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
78268
78342
+
Arg
CCG
[ENA]
¡û
>W131159182
AQUV01000003
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
141968
142042
+
Arg
CCG
[ENA]
¡û
>W131169227
AREP01000002
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
127074
127150
+
Arg
CCG
[ENA]
¡û
>W131215734
ATVG01000002
Actinomycetota
Corynebacterium massiliense DSM 45435 [ATVG]
110745
110821
+
Arg
CCG
[ENA]
¡û
>W131251666
CAVS020000033
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
114869
114793
-
Arg
CCG
[ENA]
¡û
>W141008911
AHAE01000040
Actinomycetota
Corynebacterium otitidis ATCC 51513 [AHAE]
59342
59418
+
Arg
CCG
[ENA]
¡û
>WENV181212342
OFBO01003129
[OFBO] metagenome; hydrothermal vent
254
180
-
Arg
CCG
[ENA]
¢þ
>WENV181212419
OFBP01003338
[OFBP] metagenome; hydrothermal vent
263
337
+
Arg
CCG
[ENA]
¢þ
>WENV181212501
OFBQ01003328
[OFBQ] metagenome; hydrothermal vent
263
337
+
Arg
CCG
[ENA]
¢þ
>WENV181212580
OFBR01003160
[OFBR] metagenome; hydrothermal vent
263
337
+
Arg
CCG
[ENA]
¢þ
>WENV181212656
OFBS01003237
[OFBS] metagenome; hydrothermal vent
263
337
+
Arg
CCG
[ENA]
¢þ
>WENV181212735
OFBT01002211
[OFBT] metagenome; hydrothermal vent
263
337
+
Arg
CCG
[ENA]
¢þ
>W141243953
CAJZ01000092
Actinomycetota
Corynebacterium otitidis ATCC 51513 [CAJZ]
9593
9517
-
Arg
CCG
[ENA]
¡û
>W141259179
CBYN010000089
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
11090
11166
+
Arg
CCG
[ENA]
¡û
>WENV182636043
OJKZ01000150
[OJKZ] metagenome; surface
24252
24326
+
Arg
CCG
[ENA]
¢þ
>WENV182643630
OJLW01000285
[OJLW] metagenome; surface
3020
2946
-
Arg
CCG
[ENA]
¢þ
>WENV182644734
OJLY01000221
[OJLY] metagenome; surface
31755
31829
+
Arg
CCG
[ENA]
¢þ
>WENV182671723
OJNM01001681
[OJNM] metagenome; surface
5257
5183
-
Arg
CCG
[ENA]
¢þ
>C181143875
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
917631
917707
+
Arg
CCG
-
¡û
>C181225946
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
1109277
1109203
-
Arg
CCG
-
¡û
>C181226222
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
1441009
1441085
+
Arg
CCG
-
¡û
>W09124040
ACHJ01000069
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
647
571
-
Arg
CCG
[ENA]
¡û
>W1910339895
FTLL01000013
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
14095
14171
+
Arg
CCG
[ENA]
¡û
>W1910469810
FWYQ01000001
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
101406
101482
+
Arg
CCG
[ENA]
¡û
>W1911179020
NQMQ01000009
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
83606
83532
-
Arg
CCG
[ENA]
¡û
>W1911243308
NSGK01000001
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
135302
135376
+
Arg
CCG
[ENA]
¡û
>W1911243367
NSGL01000001
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
1200969
1201043
+
Arg
CCG
[ENA]
¡û
>W1911243459
NSGM01000006
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
204
130
-
Arg
CCG
[ENA]
¡û
>W1911243474
NSGN01000002
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
186302
186376
+
Arg
CCG
[ENA]
¡û
>W1911243524
NSGO01000002
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
135272
135346
+
Arg
CCG
[ENA]
¡û
>W1911243584
NSGP01000002
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
84325
84251
-
Arg
CCG
[ENA]
¡û
>W1911551183
OVSI01000001
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
507012
507086
+
Arg
CCG
[ENA]
¡û
>W1911596570
PNHG01000023
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
809
735
-
Arg
CCG
[ENA]
¡û
>W1810187373
PKHN01000009
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
10478
10404
-
Arg
CCG
[ENA]
¡û
>W1810568906
QEEY01000009
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
45115
45191
+
Arg
CCG
[ENA]
¡û
>C151045529
CP009211
Actinomycetota
Corynebacterium imitans DSM 44264 [CP009211]
1027311
1027237
-
Arg
CCG
[Ensembl]
¡û
>C151045612
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
954006
953929
-
Arg
CCG
[Ensembl]
¡û
>W1511351436
JRNG01000006
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
276
202
-
Arg
CCG
[ENA]
¡û
>W1511595755
LBNF01000026
Actinomycetota
Corynebacterium otitidis TD1 [LBNF]
16234
16158
-
Arg
CCG
[ENA]
¡û
>W1511644843
LDYD01000008
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
111049
110973
-
Arg
CCG
[ENA]
¡û
>C161041038
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
983237
983313
+
Arg
CCG
[Ensembl]
¡û
>W1610436814
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
236792
236866
+
Arg
CCG
[ENA]
¡û
>W1610996160
LXGG01000012
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
177402
177478
+
Arg
CCG
[ENA]
¡û
>ENV005337
EU060460
Environmental sample from ENV division of INSDC
406
482
+
Arg
CCG
[ENA]
>W1710436550
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
236792
236866
+
Arg
CCG
[ENA]
¡û
>W1710552135
FOGQ01000003
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
109174
109098
-
Arg
CCG
[ENA]
¡û
>W1710598799
FTOF01000018
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
7765
7689
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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