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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20851 (37 seq.)
>W131051972
AMYG01000024
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
8642
8552
-
Ser
CGA
[ENA]
¡û
>W131167540
ARDJ01000001
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
133755
133845
+
Ser
CGA
[ENA]
¡û
>w018992
AATV01000069
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
2135
2227
+
Ser
CGA
[ENA]
¡û
>w010161
AAKQ01000001
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
235096
235004
-
Ser
CGA
[ENA]
¡û
>W141092573
AVAF01000010
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
42434
42524
+
Ser
CGA
[ENA]
¡û
>WENV181226261
OFDK01000420
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
624
714
+
Ser
CGA
[ENA]
¢þ
>WENV181404210
OGBZ01004102
[OGBZ] sediment metagenome; hot spring sediment
804
894
+
Ser
CGA
[ENA]
¢þ
>C08010930
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
35334
35424
+
Ser
CGA
[Ensembl]
¡û
>C08011059
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
2276211
2276124
-
Ser
CGA
[Ensembl]
¡û
>W141276496
JADV01000025
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
16489
16399
-
Ser
CGA
[ENA]
¡û
>WENV170675650
LDZP01000179
[LDZP] terrestrial metagenome; oil reservoir sample I1
29679
29769
+
Ser
CGA
[ENA]
¢þ
>C191108094
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
447339
447429
+
Ser
CGA
-
¡û
>W09133519
ACPF01000008
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
3727
3637
-
Ser
CGA
[ENA]
¡û
>W09134150
ACQZ01000050
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
1744
1834
+
Ser
CGA
[ENA]
¡û
>W09135054
ACVH01000021
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
8857
8767
-
Ser
CGA
[ENA]
¡û
>W09135186
ACVK01000053
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
8788
8698
-
Ser
CGA
[ENA]
¡û
>W09135855
ACXP01000013
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
8590
8500
-
Ser
CGA
[ENA]
¡û
>C151045282
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
44933
45023
+
Ser
CGA
[Ensembl]
¡û
>W10105929
ACXY01000009
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
8688
8598
-
Ser
CGA
[ENA]
¡û
>W10120512
ADXD01000075
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
9071
8981
-
Ser
CGA
[ENA]
¡û
>C10113368
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
37525
37615
+
Ser
CGA
[Ensembl]
¡û
>C10113422
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
95903
95993
+
Ser
CGA
[Ensembl]
¡û
>W11108252
ACXY01000009
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
8688
8598
-
Ser
CGA
[ENA]
¡û
>W1511275109
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
399506
399416
-
Ser
CGA
[ENA]
¡û
>C11122486
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
2263355
2263265
-
Ser
CGA
[Ensembl]
¡û
>C11122688
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
35238
35328
+
Ser
CGA
[Ensembl]
¡û
>C11123219
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
57298
57388
+
Ser
CGA
[Ensembl]
¡û
>W11127121
ADXD01000075
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
9071
8981
-
Ser
CGA
[ENA]
¡û
>W11152648
AEYS01000010
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
21013
20923
-
Ser
CGA
[ENA]
¡û
>W1610043680
BAZY01000032
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
16395
16305
-
Ser
CGA
[ENA]
¡û
>W121068093
AJUD01000008
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
324091
324181
+
Ser
CGA
[ENA]
¡û
>W1610612282
LGEO01000016
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
29679
29769
+
Ser
CGA
[ENA]
¡û
>W1710040840
BAZY01000032
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
16395
16305
-
Ser
CGA
[ENA]
¡û
>W1710515331
FNBS01000059
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
7003
7093
+
Ser
CGA
[ENA]
¡û
>W1710560379
FONI01000029
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
8935
8845
-
Ser
CGA
[ENA]
¡û
>W1710583317
FQUR01000013
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
84843
84933
+
Ser
CGA
[ENA]
¡û
>W1710733788
LGEO01000016
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
29679
29769
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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