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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208578 (6 seq.)
>W2110229420
JACJQF010000088
Cyanobacteriota
Calothrix sp. FACHB-168 [JACJQF]
3283
3209
-
Ile
TAT
[ENA]
¡û
>W2110229466
JACJQG010000064
Cyanobacteriota
Calothrix anomala FACHB-343 [JACJQG]
10646
10720
+
Ile
GAT
[ENA]
¡û
>W2110229531
JACJQH010000063
Cyanobacteriota
Calothrix parietina FACHB-288 [JACJQH]
10640
10714
+
Ile
GAT
[ENA]
¡û
>W2110229592
JACJQI010000043
Cyanobacteriota
Aulosira sp. FACHB-113 [JACJQI]
29023
29097
+
Ile
TAT
[ENA]
¡û
>W2110229649
JACJQJ010000072
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
2179
2253
+
Ile
GAT
[ENA]
¡û
>W2110229732
JACJQK010000079
Cyanobacteriota
Calothrix sp. FACHB-1219 [JACJQK]
3283
3209
-
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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