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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
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Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208844 (126 seq.)
>W1711491903
MKJY01000332
Actinomycetota
Actinomadura sp. CNU-125 [MKJY]
20651
20575
-
Ala
CGC
[ENA]
¡û
>W1711511169
MLCF01000081
Actinomycetota
Mangrovactinospora gilvigrisea gilvigriseus [MLCF]
1229
1153
-
Ala
CGC
[ENA]
¡û
>W1711613613
MOYN01000110
Actinomycetota
Thermomonospora sp. CIF 1 [MOYN]
11868
11944
+
Ala
CGC
[ENA]
¡û
>W131053549
ANAD01000190
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
25901
25827
-
Ala
CGC
[ENA]
¡û
>W131054294
ANAS01000020
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
263369
263443
+
Ala
CGC
[ENA]
¡û
>W131055160
ANBG01000285
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
5927
5851
-
Ala
CGC
[ENA]
¡û
>W131169572
AREV01000026
Actinomycetota
Actinopolymorpha alba DSM 45243 [AREV]
90843
90917
+
Ala
CGC
[ENA]
¡û
>W131170538
ARFO01000024
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
275423
275347
-
Ala
CGC
[ENA]
¡û
>W131054844
ANBB01000017
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
16168
16244
+
Ala
CGC
[ENA]
¡û
>C000348
CP000481
Actinomycetota
Acidothermus cellulolyticus 11B 11B; ATCC 43068 [CP000481]
179235
179159
-
Ala
CGC
[Ensembl]
¡û
>WENV180017987
FSXZ01001225
[FSXZ] metagenome; soil
2947
2869
-
Ala
CGC
[ENA]
¡û
>WENV180342249
OBLJ01001895
[OBLJ] soil metagenome; Clay
2649
2727
+
Ala
CGC
[ENA]
¡û
>WENV180343661
OBLK01057075
[OBLK] soil metagenome; Clay
338
414
+
Ala
CGC
[ENA]
¡û
>WENV180395816
OBPT01157762
[OBPT] marine metagenome; ENVO:00002010 seawater
218
144
-
Ala
CGC
[ENA]
¡û
>WENV181145240
OEHO01241172
[OEHO] metagenome; unknown
70
145
+
Ala
CGC
[ENA]
¡û
>WENV181171815
OEIV010366431
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
187
112
-
Ala
CGC
[ENA]
¡û
>WENV181191695
OEPS010168877
[OEPS] soil metagenome; soil
274
199
-
Ala
CGC
[ENA]
¡û
>WENV181286145
OFGV01000792
[OFGV] soil metagenome; Clay
3632
3710
+
Ala
CGC
[ENA]
¡û
>WENV181292387
OFHE01004705
[OFHE] soil metagenome; Clay
271
347
+
Ala
CGC
[ENA]
¡û
>WENV181292638
OFHF01002888
[OFHF] soil metagenome; Clay
800
722
-
Ala
CGC
[ENA]
¡û
>WENV181293340
OFHG01001583
[OFHG] soil metagenome; Clay
6338
6416
+
Ala
CGC
[ENA]
¡û
>WENV181293865
OFHG01033853
[OFHG] soil metagenome; Clay
902
980
+
Ala
CGC
[ENA]
¡û
>WENV181296213
OFHJ01013740
[OFHJ] soil metagenome; Clay
357
283
-
Ala
CGC
[ENA]
¡û
>WENV181296591
OFHJ01066286
[OFHJ] soil metagenome; Clay
340
266
-
Ala
CGC
[ENA]
¡û
>WENV181296832
OFHK01000570
[OFHK] soil metagenome; Clay
9939
9861
-
Ala
CGC
[ENA]
¡û
>WENV181297156
OFHK01013012
[OFHK] soil metagenome; Clay
407
329
-
Ala
CGC
[ENA]
¡û
>WENV181297751
OFHK01122679
[OFHK] soil metagenome; Clay
112
186
+
Ala
CGC
[ENA]
¡û
>W141140050
AWOO02000017
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
140171
140095
-
Ala
CGC
[ENA]
¡û
>WENV183750216
PPFU01273161
[PPFU] hypolithon metagenome; Antarctic Hypolithon
809
885
+
Ala
CGC
[ENA]
¡û
>C181072198
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
1312837
1312912
+
Ala
CGC
-
¡û
>C191089022
CP032402
Actinomycetota
Thermomonospora amylolytica YIM 77502 [CP032402]
1206821
1206896
+
Ala
CGC
-
¡û
>W141730520
JNIK01000011
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
121706
121630
-
Ala
CGC
[ENA]
¡û
>W09105017
AAOL01000004
Actinomycetota
Acidothermus cellulolyticus 11B [AAOL]
193221
193297
+
Ala
CGC
[ENA]
¡û
>W141820105
JQMQ01000005
Actinomycetota
Phaeacidiphilus oryzae TH49 [JQMQ]
3094680
3094604
-
Ala
CGC
[ENA]
¡û
>W1911813338
QZEY01000003
Actinomycetota
Streptosporangiaceae bacterium YIM 75507 [QZEY]
280407
280329
-
Ala
CGC
[ENA]
¡û
>W1810224064
POUA01000115
Actinomycetota
Spongiactinospora gelatinilytica 7K107 [POUA]
8888
8963
+
Ala
CGC
[ENA]
¡û
>W1810364464
PVTG01000006
Actinomycetota
Geodermatophilus tzadiensis DSM 45416 [PVTG]
77285
77360
+
Ala
CGC
[ENA]
¡û
>W1810367956
PVZC01000002
Actinomycetota
Allonocardiopsis opalescens DSM 45601 [PVZC]
66370
66294
-
Ala
CGC
[ENA]
¡û
>W1810570502
QEIN01000009
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
38061
37985
-
Ala
CGC
[ENA]
¡û
>W1810570556
QEIO01000007
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
28029
28105
+
Ala
CGC
[ENA]
¡û
>W1810676851
QKMH01000008
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
167531
167456
-
Ala
CGC
[ENA]
¡û
>W1810701620
QMEY01000042
Actinomycetota
Spongiactinospora rosea LHW63015 [QMEY]
32205
32127
-
Ala
CGC
[ENA]
¡û
>W1810733430
QOHG01000007
Actinomycetota
Blastococcus sp. TF02A-26 [QOHG]
158718
158643
-
Ala
CGC
[ENA]
¡û
>W1810913824
QVNQ01000004
Actinomycetota
Actinomadura spongiicola LHW52907 [QVNQ]
184067
184142
+
Ala
CGC
[ENA]
¡û
>W2010148845
CAACUY010000293
Actinomycetota
Actinomadura fibrosa [CAACUY]
9510
9435
-
Ala
CGC
[ENA]
¡û
>W2010148904
CAACUZ010000057
Actinomycetota
Actinomadura formosensis [CAACUZ]
199
274
+
Ala
CGC
[ENA]
¡û
>W2010148929
CAACVB010000025
Actinomycetota
Actinomadura sp. LMG 30035 [CAACVB]
32269
32344
+
Ala
CGC
[ENA]
¡û
>W2010415837
FXTJ01000002
Actinomycetota
Geodermatophilus aquaeductus DSM 46834 [FXTJ]
563611
563536
-
Ala
CGC
[ENA]
¡û
>W2010667676
JACBYX010000001
Actinomycetota
Acidothermus cellulolyticus 10B [JACBYX]
397021
396945
-
Ala
CGC
[ENA]
¡û
>W2010667998
JACBZD010000002
Actinomycetota
Allostreptomyces psammosilenae DSM 42178 [JACBZD]
364678
364755
+
Ala
CGC
[ENA]
¡û
>W2010668149
JACBZH010000001
Actinomycetota
Actinopolymorpha rutila DSM 18448 [JACBZH]
1395067
1395143
+
Ala
CGC
[ENA]
¡û
>W2010670526
JACCBA010000001
Actinomycetota
Actinomadura luteofluorescens DSM 40398 [JACCBA]
3154454
3154379
-
Ala
CGC
[ENA]
¡û
>W2010671922
JACCCC010000001
Actinomycetota
Spinactinospora alkalitolerans CXB654 [JACCCC]
621398
621473
+
Ala
CGC
[ENA]
¡û
>W2010674802
JACCFO010000001
Actinomycetota
Streptomonospora nanhaiensis DSM 45927 [JACCFO]
2833750
2833676
-
Ala
CGC
[ENA]
¡û
>W2010696768
JACHDB010000001
Actinomycetota
Nocardiopsis composta DSM 44551 [JACHDB]
5182632
5182707
+
Ala
CGC
[ENA]
¡û
>W2010697748
JACHDS010000001
Actinomycetota
Nocardiopsis mwathae DSM 46659 [JACHDS]
4147515
4147440
-
Ala
CGC
[ENA]
¡û
>W2010701257
JACHGN010000007
Actinomycetota
Thermocatellispora tengchongensis DSM 45615 [JACHGN]
407370
407295
-
Ala
CGC
[ENA]
¡û
>W2010740274
JACJIA010000020
Actinomycetota
Actinomadura namibiensis DSM 44197 [JACJIA]
18610
18685
+
Ala
CGC
[ENA]
¡û
>W2010740658
JACJII010000001
Actinomycetota
Actinomadura cellulosilytica DSM 45823 [JACJII]
2481684
2481759
+
Ala
CGC
[ENA]
¡û
>W2011132594
NVPT01000088
Actinomycetota
Geodermatophilus sp. B12 [NVPT]
14667
14742
+
Ala
CGC
[ENA]
¡û
>W2011347608
QZEY01000003
Actinomycetota
Streptosporangiaceae bacterium YIM 75507 [QZEY]
280407
280329
-
Ala
CGC
[ENA]
¡û
>W2011388415
RBWU01000005
Actinomycetota
Actinomadura pelletieri DSM 43383 [RBWU]
596914
596840
-
Ala
CGC
[ENA]
¡û
>W2011416214
RFFG01000079
Actinomycetota
Actinomadura sp. NEAU-Ht49 [RFFG]
19041
19116
+
Ala
CGC
[ENA]
¡û
>W2011486497
RRYT01000008
Actinomycetota
Thermomonospora catenispora 3-22-3 [RRYT]
134613
134539
-
Ala
CGC
[ENA]
¡û
>W2011578221
SGXD01000003
Actinomycetota
Motilibacter rhizosphaerae DSM 45622 [SGXD]
744914
744839
-
Ala
CGC
[ENA]
¡û
>W2011635225
SMJX01000072
Actinomycetota
Actinomadura sp. KC216 [SMJX]
7903
7828
-
Ala
CGC
[ENA]
¡û
>W2011636542
SMKU01000550
Actinomycetota
Actinomadura sp. H3C3 [SMKU]
1597
1673
+
Ala
CGC
[ENA]
¡û
>W2011673935
SPQN01000018
Actinomycetota
Geodermatophilus sp. DF01_2 [SPQN]
381
456
+
Ala
CGC
[ENA]
¡û
>W2011975831
VCKW01000007
Actinomycetota
Actinomadura sp. 14C53 [VCKW]
61760
61685
-
Ala
CGC
[ENA]
¡û
>W2011976024
VCKZ01000053
Actinomycetota
Actinomadura geliboluensis A8036 [VCKZ]
16874
16950
+
Ala
CGC
[ENA]
¡û
>W2012021102
VFOZ01000001
Actinomycetota
Actinoallomurus bryophytorum DSM 102200 [VFOZ]
1544030
1543956
-
Ala
CGC
[ENA]
¡û
>W2012021842
VFPO01000001
Actinomycetota
Actinomadura hallensis DSM 45043 [VFPO]
5507028
5506953
-
Ala
CGC
[ENA]
¡û
>W2012129998
VSFG01000002
Actinomycetota
Actinomadura chibensis JCM 14158 [VSFG]
376237
376312
+
Ala
CGC
[ENA]
¡û
>W2012132030
VSRQ01000003
Actinomycetota
Actinomadura sp. CYP1-5 [VSRQ]
682506
682431
-
Ala
CGC
[ENA]
¡û
>W2012229726
WBMR01000161
Actinomycetota
Actinomadura montaniterrae CYP1-1B [WBMR]
15105
15180
+
Ala
CGC
[ENA]
¡û
>W2012308151
WEGH01000001
Actinomycetota
Actinomadura sp. RB68 [WEGH]
2338718
2338642
-
Ala
CGC
[ENA]
¡û
>W2012337078
WING01000001
Actinomycetota
Actinomadura sp. J1-007 [WING]
1928402
1928324
-
Ala
CGC
[ENA]
¡û
>W2012405906
WOFH01000012
Actinomycetota
Actinomadura sp. NEAU-AAG5 [WOFH]
246049
246126
+
Ala
CGC
[ENA]
¡û
>W2110301417
JADBEM010000001
Actinomycetota
Actinopolymorpha pittospori DSM 45354 [JADBEM]
9327067
9326991
-
Ala
CGC
[ENA]
¡û
>W2110362696
JADOUA010000001
Actinomycetota
Actinomadura viridis DSM 43175 [JADOUA]
1248002
1248080
+
Ala
CGC
[ENA]
¡û
>W2110458962
JAFBCM010000001
Actinomycetota
Tenggerimyces flavus DSM 28944 [JAFBCM]
2365638
2365714
+
Ala
CGC
[ENA]
¡û
>W2110523760
JAGEOJ010000003
Actinomycetota
Actinomadura barringtoniae GKU 128 [JAGEOJ]
371370
371292
-
Ala
CGC
[ENA]
¡û
>W2110523873
JAGEOK010000028
Actinomycetota
Actinomadura nitritigenes L46 [JAGEOK]
81226
81151
-
Ala
CGC
[ENA]
¡û
>W2110523964
JAGEPF010000012
Actinomycetota
Actinomadura sp. LCR2-06 [JAGEPF]
79872
79950
+
Ala
CGC
[ENA]
¡û
>W2110600876
JAHFZY010000008
Actinomycetota
Actinomadura sp. NEAU-AAG7 [JAHFZY]
114362
114284
-
Ala
CGC
[ENA]
¡û
>W2110641528
JAHRXH010000001
Actinomycetota
Streptomonospora sp. NEAU-YY374 [JAHRXH]
281927
282001
+
Ala
CGC
[ENA]
¡û
>W2110680679
JAIHLS010000002
Actinomycetota
Streptomonospora halotolerans NEAU-Jh2-17 [JAIHLS]
63035
62961
-
Ala
CGC
[ENA]
¡û
>C211277085
CP070499
Actinomycetota
Micromonosporaceae bacterium DSM 106523 [CP070499]
4775592
4775516
-
Ala
CGC
-
¡û
>C231083283
CP059572
Actinomycetota
Actinomadura graeca 32-07 [CP059572]
6280276
6280351
+
Ala
CGC
-
¡û
>C231342210
CP094265
Actinomycetota
Actinomadura madurae MRC008 [CP094265]
7212251
7212176
-
Ala
CGC
-
¡û
>C231342277
CP094266
Actinomycetota
Actinomadura madurae MRC005 [CP094266]
9236578
9236503
-
Ala
CGC
-
¡û
>C241088992
CP044407
Actinomycetota
Actinomadura sp. WMMB 499 WMMB499 [CP044407]
2564445
2564369
-
Ala
CGC
-
¡û
>C241170422
CP054932
Actinomycetota
Actinomadura sp. NAK00032 [CP054932]
1674870
1674794
-
Ala
CGC
-
¡û
>C241203443
CP107927
Actinomycetota
Spirillospora sp. NBC_00431 [CP107927]
6559640
6559565
-
Ala
CGC
-
¡û
>C241215934
CP109433
Actinomycetota
Actinoallomurus sp. NBC_01490 [CP109433]
9680550
9680476
-
Ala
CGC
-
¡û
>W2310027855
BSRQ01000024
Actinomycetota
Microtetraspora sp. NBRC 13810 [BSRQ]
146763
146838
+
Ala
CGC
[ENA]
¡û
>W2310028190
BSRZ01000003
Actinomycetota
Actinomadura rubrobrunea NBRC 14622 [BSRZ]
311649
311575
-
Ala
CGC
[ENA]
¡û
>W2310029469
BSTJ01000003
Actinomycetota
Actinoallomurus iriomotensis NBRC 103681 [BSTJ]
2931
2857
-
Ala
CGC
[ENA]
¡û
>W2310029519
BSTM01000007
Actinomycetota
Actinomadura sp. NBRC 104412 [BSTM]
89537
89615
+
Ala
CGC
[ENA]
¡û
>C10107395
CP001867
Actinomycetota
Geodermatophilus obscurus DSM 43160 [CP001867]
940519
940595
+
Ala
CGC
[Ensembl]
¡û
>C10113124
CP001738
Actinomycetota
Thermomonospora curvata DSM 43183 [CP001738]
1020426
1020502
+
Ala
CGC
[Ensembl]
¡û
>W1610067544
BCQQ01000166
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
197
273
+
Ala
CGC
[ENA]
¡û
>W1610067575
BCQR01000054
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
46717
46793
+
Ala
CGC
[ENA]
¡û
>W1610067753
BCQU01000010
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
30374
30300
-
Ala
CGC
[ENA]
¡û
>W1610068549
BCRK01000136
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
8281
8357
+
Ala
CGC
[ENA]
¡û
>W1610551410
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
349126
349200
+
Ala
CGC
[ENA]
¡û
>W1610551433
JYIK01000631
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
3003
2929
-
Ala
CGC
[ENA]
¡û
>W1710064917
BCQQ01000166
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
197
273
+
Ala
CGC
[ENA]
¡û
>W1710064948
BCQR01000054
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
46717
46793
+
Ala
CGC
[ENA]
¡û
>W1710065126
BCQU01000010
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
30374
30300
-
Ala
CGC
[ENA]
¡û
>W1710065922
BCRK01000136
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
8281
8357
+
Ala
CGC
[ENA]
¡û
>W1710504204
FMHV01000002
Actinomycetota
Micromonospora rhizosphaerae [FMHV]
1553683
1553759
+
Ala
CGC
[ENA]
¡û
>W1710522451
FNHE01000016
Actinomycetota
Geodermatophilus siccatus [FNHE]
55976
56052
+
Ala
CGC
[ENA]
¡û
>W1710524310
FNIQ01000001
Actinomycetota
Geodermatophilus sp. DSM 45219 [FNIQ]
376119
376043
-
Ala
CGC
[ENA]
¡û
>W1710526589
FNKK01000002
Actinomycetota
Thermostaphylospora chromogena [FNKK]
968670
968594
-
Ala
CGC
[ENA]
¡û
>W1710530456
FNOT01000004
Actinomycetota
Geodermatophilus africanus [FNOT]
143062
142986
-
Ala
CGC
[ENA]
¡û
>W1710539643
FNVO01000032
Actinomycetota
Thermomonospora echinospora [FNVO]
45750
45826
+
Ala
CGC
[ENA]
¡û
>W1710554086
FOIE01000005
Actinomycetota
Geodermatophilus poikilotrophus [FOIE]
39107
39031
-
Ala
CGC
[ENA]
¡û
>W1710561650
FOOI01000002
Actinomycetota
Actinopolymorpha cephalotaxi [FOOI]
368609
368685
+
Ala
CGC
[ENA]
¡û
>W1710570685
FOVH01000015
Actinomycetota
Actinomadura madurae [FOVH]
190169
190093
-
Ala
CGC
[ENA]
¡û
>W1710572375
FOWQ01000003
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
553421
553497
+
Ala
CGC
[ENA]
¡û
>W1710592801
FRCS01000015
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
116168
116092
-
Ala
CGC
[ENA]
¡û
>W1710593468
FRDM01000007
Actinomycetota
Geodermatophilus obscurus [FRDM]
36707
36631
-
Ala
CGC
[ENA]
¡û
>W1710600738
FUWS01000012
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
204482
204406
-
Ala
CGC
[ENA]
¡û
>W1710661683
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
349126
349200
+
Ala
CGC
[ENA]
¡û
>W1710661706
JYIK01000631
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
3003
2929
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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