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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208854 (36 seq.)
>W1710893512
LNEV01000009
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
142543
142619
+
Asp
GTC
[ENA]
¡û
>W1711350373
MCRJ01000025
Alphaproteobacteria
Methylobrevis pamukkalensis [MCRJ]
35284
35208
-
Asp
GTC
[ENA]
¡û
>W1711501163
MKRH01000019
Alphaproteobacteria
Alphaproteobacteria bacterium 64-11 [MKRH]
22590
22514
-
Asp
GTC
[ENA]
¡û
>W1711501662
MKRW01000123
Alphaproteobacteria
Alphaproteobacteria bacterium 62-8 [MKRW]
5616
5540
-
Asp
GTC
[ENA]
¡û
>W1711502664
MKSX01000014
Alphaproteobacteria
Alphaproteobacteria bacterium 33-17 [MKSX]
243
167
-
Asp
GTC
[ENA]
¡û
>WENV180020773
FTDB01001373
[FTDB] metagenome; soil
3342
3418
+
Asp
GTC
[ENA]
¡û
>WENV180020812
FTDB01002275
[FTDB] metagenome; soil
2561
2637
+
Asp
GTC
[ENA]
¡û
>WENV180027871
FTIZ01191782
[FTIZ] metagenome; soil
2104
2180
+
Asp
GTC
[ENA]
¡û
>WENV180030058
FTJL01109496
[FTJL] metagenome; soil
538
462
-
Asp
GTC
[ENA]
¡û
>WENV180351530
OBLQ010067719
[OBLQ] soil metagenome; soil
173
97
-
Asp
GTC
[ENA]
¡û
>WENV180584776
OCOJ01393854
[OCOJ] soil metagenome; soil
250
174
-
Asp
GTC
[ENA]
¡û
>WENV181307938
OFIS01000049
[OFIS] sludge metagenome; sludge
129862
129938
+
Asp
GTC
[ENA]
¡û
>WENV181311245
OFJB01000410
[OFJB] sludge metagenome; sludge
846
770
-
Asp
GTC
[ENA]
¡û
>WENV181401428
OFTX01000161
[OFTX] sludge metagenome; sludge
17285
17209
-
Asp
GTC
[ENA]
¡û
>WENV183092508
OLLF01000106
[OLLF] soil metagenome; soil
15837
15913
+
Asp
GTC
[ENA]
¡û
>WENV183093002
OLLQ01000599
[OLLQ] soil metagenome; soil
15
91
+
Asp
GTC
[ENA]
¡û
>C181227368
LT960614
Alphaproteobacteria
Hartmannibacter diazotrophicus type strain: E19 [LT960614]
2778247
2778323
+
Asp
GTC
-
¡û
>W141814334
JQGB01000093
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
2212
2288
+
Asp
GTC
[ENA]
¡û
>C151079196
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
1489038
1488962
-
Asp
GTC
[Ensembl]
¡û
>W2010678090
JACDIS010000002
Alphaproteobacteria
Chthonobacter sp. yh7-1 [JACDIS]
225509
225585
+
Asp
GTC
[ENA]
¡û
>W2010678161
JACDIT010000007
Alphaproteobacteria
Chthonobacter albigriseus KCTC 42450 [JACDIT]
80246
80322
+
Asp
GTC
[ENA]
¡û
>W2012444494
WUJM01000574
Alphaproteobacteria
Oharaeibacter diazotrophicus SM30 [WUJM]
315
391
+
Asp
GTC
[ENA]
¡û
>W2110022706
BMFM01000001
Alphaproteobacteria
Youhaiella tibetensis CGMCC 1.12719 [BMFM]
1138820
1138896
+
Asp
GTC
[ENA]
¡û
>W2110403273
JADZLT010000052
Alphaproteobacteria
Methylobrevis albus L22 [JADZLT]
32025
32101
+
Asp
GTC
[ENA]
¡û
>W2110429692
JAEMUJ010000167
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [JAEMUJ]
49825
49901
+
Asp
GTC
[ENA]
¡û
>W2110429737
JAEMUK010000014
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JAEMUK]
60309
60233
-
Asp
GTC
[ENA]
¡û
>W2110517944
JAFNIH010000025
Alphaproteobacteria
Pinisolibacter sp. B13 [JAFNIH]
209856
209932
+
Asp
GTC
[ENA]
¡û
>C201169798
CP045919
Alphaproteobacteria
Devosia sp. D6-9 [CP045919]
2327897
2327973
+
Asp
GTC
-
¡û
>C211011721
AP023361
Alphaproteobacteria
Terrihabitans soli IZ6 [AP023361]
1412165
1412241
+
Asp
GTC
-
¡û
>W2110698639
JAIUIE010000001
Alphaproteobacteria
Mesorhizobium sp. BR1-1-16 [JAIUIE]
429842
429918
+
Asp
GTC
[ENA]
¡û
>W10112682
ADFF01000001
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
160070
160146
+
Asp
GTC
[ENA]
¡û
>C241059320
CP041690
Alphaproteobacteria
Youhaiella tibetensis fig4 [CP041690]
2308273
2308197
-
Asp
GTC
-
¡û
>C241261756
CP125860
Alphaproteobacteria
Rhodomicrobium lacus DSM 166 [CP125860]
1258611
1258687
+
Asp
GTC
-
¡û
>W11115909
ADFF01000001
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
160070
160146
+
Asp
GTC
[ENA]
¡û
>C11119047
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
639473
639397
-
Asp
GTC
[Ensembl]
¡û
>W1610753778
LNEV01000009
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
142543
142619
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK