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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.208924 (40 seq.)
>W131225251
AUDK01000009
Bacteroidota
Flavobacterium daejeonense DSM 17708 [AUDK]
40950
40874
-
Ala
GGC
[ENA]
¡û
>W1711713277
MTCY01000005
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
72150
72226
+
Ala
GGC
[ENA]
¡û
>W1711713327
MTCZ01000003
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
21761
21685
-
Ala
GGC
[ENA]
¡û
>W1711713392
MTDA01000005
Bacteroidota
Flavobacterium covae columnare [MTDA]
96627
96553
-
Ala
GGC
[ENA]
¡û
>W1711713472
MTDC01000139
Bacteroidota
Flavobacterium covae columnare [MTDC]
6874
6948
+
Ala
GGC
[ENA]
¡û
>W1711713487
MTDD01000003
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
78027
78103
+
Ala
GGC
[ENA]
¡û
>C171053218
CP016907
Bacteroidota
Flavobacterium anhuiense GSE09 [CP016907]
2216566
2216490
-
Ala
GGC
-
¡û
>WENV180039349
LLBY010055639
[LLBY] soil metagenome; soil from tomato rhizosphere
1705
1779
+
Ala
GGC
[ENA]
¡û
>WENV180039523
LLBY010085970
[LLBY] soil metagenome; soil from tomato rhizosphere
1639
1713
+
Ala
GGC
[ENA]
¡û
>WENV180041135
LLBZ010050043
[LLBZ] soil metagenome; soil from tomato rhizosphere
11903
11977
+
Ala
GGC
[ENA]
¡û
>C181176607
CP029255
Bacteroidota
Flavobacterium crocinum HYN0056 [CP029255]
635897
635971
+
Ala
GGC
-
¡û
>W1910804157
MTCX01000027
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
12911
12985
+
Ala
GGC
[ENA]
¡û
>W1910804197
MTDB01000001
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
97009
96935
-
Ala
GGC
[ENA]
¡û
>W1910808976
MUGU01000024
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
123466
123540
+
Ala
GGC
[ENA]
¡û
>W1911533976
OLKH01000064
Bacteroidota
Flavobacterium columnare [OLKH]
76043
76117
+
Ala
GGC
[ENA]
¡û
>W2010100244
BJVF01000001
Bacteroidota
Flavobacterium glycines NBRC 105008 [BJVF]
1035275
1035351
+
Ala
GGC
[ENA]
¡û
>W2010707848
JACHLB010000001
Bacteroidota
Flavobacterium notoginsengisoli S00128 [JACHLB]
132193
132267
+
Ala
GGC
[ENA]
¡û
>W2010707970
JACHLD010000001
Bacteroidota
Flavobacterium nitrogenifigens S00142 [JACHLD]
1458635
1458561
-
Ala
GGC
[ENA]
¡û
>W2010911979
MTCX01000027
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
12911
12985
+
Ala
GGC
[ENA]
¡û
>W2010912019
MTDB01000001
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
97009
96935
-
Ala
GGC
[ENA]
¡û
>W2010913839
MUGU01000024
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
123466
123540
+
Ala
GGC
[ENA]
¡û
>W2011166733
OLKH01000064
Bacteroidota
Flavobacterium columnare [OLKH]
76043
76117
+
Ala
GGC
[ENA]
¡û
>W2011260380
QJQY01000022
Bacteroidota
Flavobacterium collinsii xwA29 [QJQY]
135193
135267
+
Ala
GGC
[ENA]
¡û
>W2011455702
RMVE01000001
Bacteroidota
Nonlabens sp. 1Q3 [RMVE]
602508
602584
+
Ala
GGC
[ENA]
¡û
>W2011521943
SACJ01000002
Bacteroidota
Flavobacterium sp. BBQ-12 [SACJ]
139756
139682
-
Ala
GGC
[ENA]
¡û
>W2012377962
WMHF01000003
Bacteroidota
Flavobacterium columnare SP1809 [WMHF]
92534
92460
-
Ala
GGC
[ENA]
¡û
>W2012378016
WMHG01000003
Bacteroidota
Flavobacterium columnare SP1802 [WMHG]
92534
92460
-
Ala
GGC
[ENA]
¡û
>W2012378161
WMHI01000022
Bacteroidota
Flavobacterium columnare CC1805 [WMHI]
21594
21520
-
Ala
GGC
[ENA]
¡û
>W2012378213
WMHJ01000021
Bacteroidota
Flavobacterium columnare CC1803 [WMHJ]
48239
48313
+
Ala
GGC
[ENA]
¡û
>W2012378272
WMHK01000022
Bacteroidota
Flavobacterium columnare CC1802 [WMHK]
21594
21520
-
Ala
GGC
[ENA]
¡û
>W2012398586
WNKE01000003
Bacteroidota
Flavobacterium columnare SP1805 [WNKE]
92534
92460
-
Ala
GGC
[ENA]
¡û
>W2110071629
BPLU01000007
Bacteroidota
Flavobacterium sp. UMI-01 [BPLU]
13447
13373
-
Ala
GGC
[ENA]
¡û
>C201139872
CP044016
Bacteroidota
Arachidicoccus sp. B3-10 [CP044016]
2642099
2642025
-
Ala
GGC
-
¡û
>C231224959
CP086234
Bacteroidota
Flavobacterium anhuiense T4 [CP086234]
606086
606160
+
Ala
GGC
-
¡û
>W2110803614
WWEM01000039
Bacteroidota
Flavobacterium quisquiliarum EA-12 [WWEM]
135881
135955
+
Ala
GGC
[ENA]
¡û
>C161063711
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
2961468
2961542
+
Ala
GGC
[Ensembl]
¡û
>C161083233
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
1612894
1612820
-
Ala
GGC
-
¡û
>W121103518
AKZQ01000025
Bacteroidota
Flavobacterium sp. F52 [AKZQ]
137692
137768
+
Ala
GGC
[ENA]
¡û
>W1710559011
FOMH01000007
Bacteroidota
Flavobacterium phragmitis [FOMH]
235656
235580
-
Ala
GGC
[ENA]
¡û
>W1710588394
FQZI01000001
Bacteroidota
Flavobacterium terrae [FQZI]
111155
111231
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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