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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20893 (7 seq.)
>WENV181822125
OGUF01032973
[OGUF] metagenome; Human gut stool
261
171
-
Ser
GGA
[ENA]
¡û
>WENV182229526
OHRI01023701
[OHRI] human gut metagenome; feces
596
506
-
Ser
GGA
[ENA]
¡û
>WENV182791949
OJSN01047851
[OJSN] human gut metagenome; human gut
254
164
-
Ser
GGA
[ENA]
¡û
>WENV182801787
OJUG01002134
[OJUG] human gut metagenome; human gut
1023
933
-
Ser
GGA
[ENA]
¡û
>WENV183074960
OLIV01004053
[OLIV] human gut metagenome; stool sample
4061
4151
+
Ser
GGA
[ENA]
¡û
>WENV183450947
OMDA01018694
[OMDA] human gut metagenome; feces
436
346
-
Ser
GGA
[ENA]
¡û
>WENV183543314
OOAN01005347
[OOAN] human gut metagenome; human gut
380
290
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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