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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209512 (36 seq.)
>W1710869871
LMKB01000004
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
93587
93511
-
Pro
GGG
[ENA]
¡û
>W1710876032
LMOW01000003
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
22034
22110
+
Pro
GGG
[ENA]
¡û
>W1710876156
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
691196
691272
+
Pro
GGG
[ENA]
¡û
>W1710880094
LMSC01000012
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
230490
230564
+
Pro
GGG
[ENA]
¡û
>W1710881214
LMSX01000008
Actinomycetota
Terrabacter sp. Soil811 [LMSX]
957120
957044
-
Pro
GGG
[ENA]
¡û
>W1711093275
LTEW01000009
Actinomycetota
Actinomyces sp. HMSC072A03 [LTEW]
5622
5546
-
Pro
GGG
[ENA]
¡û
>W1711139728
LVFF01000016
Actinomycetota
Dietzia maris [LVFF]
68657
68583
-
Pro
GGG
[ENA]
¡û
>W1711461143
MJGN01000056
Actinomycetota
Curtobacterium sp. MCBA15_008 [MJGN]
216871
216947
+
Pro
GGG
[ENA]
¡û
>W1711461276
MJGQ01000067
Actinomycetota
Curtobacterium sp. MCBA15_013 [MJGQ]
83406
83330
-
Pro
GGG
[ENA]
¡û
>W1711461298
MJGR01000020
Actinomycetota
Curtobacterium sp. MCBA15_016 [MJGR]
136562
136638
+
Pro
GGG
[ENA]
¡û
>W1712001608
NEDO01000003
Actinomycetota
Cellulosimicrobium sp. KWT-B [NEDO]
339074
339000
-
Pro
GGG
[ENA]
¡û
>C171073929
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
2272347
2272271
-
Pro
GGG
-
¡û
>WENV180019298
FTBU01000328
[FTBU] metagenome; soil
14
89
+
Pro
GGG
[ENA]
¢þ
>WENV180284188
OBID01020500
[OBID] metagenome; sludge
1178
1252
+
Pro
GGG
[ENA]
¢þ
>WENV180304624
OBJI01188575
[OBJI] soil metagenome; soil
142
218
+
Pro
GGG
[ENA]
¢þ
>WENV180311703
OBJT01484362
[OBJT] soil metagenome; soil
118
194
+
Pro
GGG
[ENA]
¢þ
>WENV181804152
OGSE01001860
[OGSE] human gut metagenome; fecal sample 3 from infant 2
463
537
+
Pro
GGG
[ENA]
¢þ
>W141220288
AZXR01001419
Actinomycetota
Promicromonospora kroppenstedtii DSM 19349 [AZXR]
3062
3138
+
Pro
GGG
[ENA]
¡û
>W141241277
CAHD01000213
Actinomycetota
Cellulomonas massiliensis JC225 [CAHD]
10733
10659
-
Pro
GGG
[ENA]
¡û
>WENV182544278
OJBF01001498
[OJBF] seawater metagenome; Sea water
1357
1431
+
Pro
GGG
[ENA]
¢þ
>WENV182583270
OJHD01001830
[OJHD] seawater metagenome; Sea water
1963
2037
+
Pro
GGG
[ENA]
¢þ
>WENV170175899
CEOS01017705
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
351
275
-
Pro
GGG
[ENA]
¢þ
>WENV170176336
CEOS01064988
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
131
205
+
Pro
GGG
[ENA]
¢þ
>C181169624
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
1274187
1274263
+
Pro
GGG
-
¡û
>C181218284
LT576032
Actinomycetota
Propionibacterium freudenreichii [LT576032]
1315552
1315477
-
Pro
GGG
-
¡û
>C181218616
LT593929
Actinomycetota
Propionibacterium freudenreichii [LT593929]
1303797
1303722
-
Pro
GGG
-
¡û
>C191134672
CP035103
Actinomycetota
Kocuria rosea ATCC 186 [CP035103]
2466224
2466150
-
Pro
GGG
-
¡û
>C191164674
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
1763976
1764050
+
Pro
GGG
-
¡û
>W141564790
JIBA01000013
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
276951
277027
+
Pro
GGG
[ENA]
¡û
>W1610069600
BCSP01000010
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
41494
41418
-
Pro
GGG
[ENA]
¡û
>W1710065679
BCRF01000028
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
21250
21326
+
Pro
GGG
[ENA]
¡û
>W1710066769
BCSL01000013
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
68650
68576
-
Pro
GGG
[ENA]
¡û
>W1710066973
BCSP01000010
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
41494
41418
-
Pro
GGG
[ENA]
¡û
>W1710523559
FNIC01000001
Actinomycetota
Nocardioides szechwanensis [FNIC]
1051760
1051684
-
Pro
GGG
[ENA]
¡û
>W1710606121
FWXN01000013
Actinomycetota
Janibacter indicus [FWXN]
88674
88750
+
Pro
GGG
[ENA]
¡û
>W1710709321
LDRC01000056
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
47169
47245
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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