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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209533 (131 seq.)
>W1710889023
LNAF01000045
Actinomycetota
Mycobacterium avium subsp. hominissuis [LNAF]
89104
89180
+
Leu
TAA
[ENA]
¡û
>W1711006491
LQOK01000020
Actinomycetota
Mycobacterium bohemicum [LQOK]
2733
2809
+
Leu
TAA
[ENA]
¡û
>W1711006958
LQOT01000057
Actinomycetota
Mycolicibacter engbaekii [LQOT]
41987
41913
-
Leu
TAA
[ENA]
¡û
>W1711008259
LQPV01000025
Actinomycetota
Mycobacterium sp. IEC1808 [LQPV]
115635
115559
-
Leu
TAA
[ENA]
¡û
>W1711008413
LQPY01000035
Actinomycetota
Mycobacterium triplex [LQPY]
126525
126599
+
Leu
TAA
[ENA]
¡û
>W1711080780
LSRH01000021
Actinomycetota
Tsukamurella pulmonis [LSRH]
250475
250551
+
Leu
TAA
[ENA]
¡û
>W1711080818
LSRI01000011
Actinomycetota
Tsukamurella pulmonis [LSRI]
254648
254724
+
Leu
TAA
[ENA]
¡û
>W1711095178
LTGO01000065
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
90385
90309
-
Leu
TAA
[ENA]
¡û
>W1711096625
LTHX01000075
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
34170
34094
-
Leu
TAA
[ENA]
¡û
>W1711102627
LTNW01000051
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
91326
91250
-
Leu
TAA
[ENA]
¡û
>W1711103618
LTOW01000004
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
30223
30147
-
Leu
TAA
[ENA]
¡û
>W1711105941
LTRH01000061
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
2634
2710
+
Leu
TAA
[ENA]
¡û
>W1711106558
LTRY01000042
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
30221
30145
-
Leu
TAA
[ENA]
¡û
>W1711107187
LTSO01000013
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
26002
25926
-
Leu
TAA
[ENA]
¡û
>W1711114766
LTZO01000083
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
2309
2385
+
Leu
TAA
[ENA]
¡û
>W1711185863
LWNT01000031
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
2556
2632
+
Leu
TAA
[ENA]
¡û
>W1711186513
LWOH01000006
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
41070
40994
-
Leu
TAA
[ENA]
¡û
>W1711186758
LWOM01000023
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
30038
29962
-
Leu
TAA
[ENA]
¡û
>W1711208419
LXGG01000020
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
143226
143302
+
Leu
TAA
[ENA]
¡û
>W1711276479
LZIE01000026
Actinomycetota
Mycobacterium sp. 852002-53434_SCH5985345 [LZIE]
109868
109792
-
Leu
TAA
[ENA]
¡û
>W1711276674
LZII01000008
Actinomycetota
Mycobacterium sp. 852002-51613_SCH5001154 [LZII]
106330
106254
-
Leu
TAA
[ENA]
¡û
>W1711277881
LZJH01000061
Actinomycetota
Mycobacterium sp. E2699 [LZJH]
2728
2804
+
Leu
TAA
[ENA]
¡û
>W1711278192
LZJN01000220
Actinomycetota
Mycobacterium sp. E183 [LZJN]
2138
2062
-
Leu
TAA
[ENA]
¡û
>W1711278741
LZJZ01000088
Actinomycetota
Mycobacterium sp. E2733 [LZJZ]
17183
17259
+
Leu
TAA
[ENA]
¡û
>W1711279121
LZKH01000210
Actinomycetota
Mycobacterium sp. E1386 [LZKH]
27889
27965
+
Leu
TAA
[ENA]
¡û
>W1711279800
LZKW01000032
Actinomycetota
Mycobacterium colombiense [LZKW]
4854
4930
+
Leu
TAA
[ENA]
¡û
>W1711281320
LZMC01000002
Actinomycetota
Mycobacterium sp. 1274761.0 [LZMC]
80894
80968
+
Leu
TAA
[ENA]
¡û
>W1711281530
LZMG01000272
Actinomycetota
Mycobacterium sp. 1245499.0 [LZMG]
9914
9838
-
Leu
TAA
[ENA]
¡û
>W1711281572
LZMH01000037
Actinomycetota
Mycobacterium asiaticum [LZMH]
202451
202525
+
Leu
TAA
[ENA]
¡û
>W1711285914
LZSQ01000113
Actinomycetota
Mycobacterium sp. 852002-51961_SCH5331710 [LZSQ]
122710
122634
-
Leu
TAA
[ENA]
¡û
>W1711286304
LZSY01000184
Actinomycetota
Mycolicibacterium peregrinum [LZSY]
4138
4064
-
Leu
TAA
[ENA]
¡û
>W1711325079
MBED01000200
Actinomycetota
Mycobacterium malmoense [MBED]
1814
1888
+
Leu
TAA
[ENA]
¡û
>W1711325113
MBEE01000201
Actinomycetota
Mycobacterium malmoense [MBEE]
24843
24769
-
Leu
TAA
[ENA]
¡û
>W1711325553
MBEN01000142
Actinomycetota
Mycobacterium colombiense [MBEN]
4847
4921
+
Leu
TAA
[ENA]
¡û
>W1711482551
MKAX01000238
Actinomycetota
Corynebacterium sp. BCW_4722 concisus [MKAX]
39663
39739
+
Leu
TAA
[ENA]
¡û
>W1711492347
MKKI01000002
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
23547
23621
+
Leu
TAA
[ENA]
¡û
>W1711772209
MVHE01000007
Actinomycetota
Mycobacterium angelicum [MVHE]
45146
45070
-
Leu
TAA
[ENA]
¡û
>W1711772833
MVHS01000005
Actinomycetota
Mycolicibacterium insubricum [MVHS]
57703
57627
-
Leu
TAA
[ENA]
¡û
>W1711773051
MVHW01000072
Actinomycetota
Mycobacterium mantenii [MVHW]
6589
6665
+
Leu
TAA
[ENA]
¡û
>W1711773236
MVIA01000059
Actinomycetota
Mycolicibacterium monacense DSM 44395 [MVIA]
9597
9523
-
Leu
TAA
[ENA]
¡û
>W1711773624
MVIJ01000010
Actinomycetota
Mycobacterium scrofulaceum [MVIJ]
24849
24773
-
Leu
TAA
[ENA]
¡û
>W1711783491
MVOC01000083
Actinomycetota
Mycobacterium sp. AT1 [MVOC]
9120
9196
+
Leu
TAA
[ENA]
¡û
>C171044590
CP015964
Actinomycetota
Mycobacterium intracellulare subsp. yongonense Asan 36912 [CP015964]
1083473
1083549
+
Leu
TAA
-
¡û
>C171044635
CP015965
Actinomycetota
Mycobacterium intracellulare subsp. yongonense Asan 36527 [CP015965]
1080823
1080899
+
Leu
TAA
-
¡û
>W131226775
AUEQ01000008
Actinomycetota
Mycobacterium sp. URHD0025 [AUEQ]
73233
73307
+
Leu
TAA
[ENA]
¡û
>W131251662
CAVS020000032
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
65467
65543
+
Leu
TAA
[ENA]
¡û
>C013073
CP000479
Actinomycetota
Mycobacterium avium 104 [CP000479]
1127570
1127646
+
Leu
TAA
[Ensembl]
¡û
>WENV181063301
ODYP01000371
[ODYP] human metagenome; G_DNA_Supragingival plaque
9865
9940
+
Leu
TAA
[ENA]
¢þ
>W141189908
AYNU01000533
Actinomycetota
Mycobacterium avium subsp. hominissuis 10-5606 [AYNU]
8411
8335
-
Leu
TAA
[ENA]
¡û
>W141190136
AYNZ01001079
Actinomycetota
Mycobacterium avium 11-0986 [AYNZ]
4287
4211
-
Leu
TAA
[ENA]
¡û
>W141190183
AYOA01000810
Actinomycetota
Mycobacterium avium subsp. paratuberculosis 11-1786 [AYOA]
7920
7844
-
Leu
TAA
[ENA]
¡û
>W141190226
AYOB01000317
Actinomycetota
Mycobacterium avium subsp. avium 11-4751 [AYOB]
10431
10355
-
Leu
TAA
[ENA]
¡û
>W141243886
CAJY01000004
Actinomycetota
Tsukamurella sp. 1534 [CAJY]
49087
49161
+
Leu
TAA
[ENA]
¡û
>WENV182629128
OJKR01007648
[OJKR] metagenome; surface
603
529
-
Leu
TAA
[ENA]
¢þ
>WENV182636046
OJKZ01000156
[OJKZ] metagenome; surface
30452
30378
-
Leu
TAA
[ENA]
¢þ
>WENV182640488
OJLB01018690
[OJLB] metagenome; surface
65
139
+
Leu
TAA
[ENA]
¢þ
>WENV182643633
OJLW01000296
[OJLW] metagenome; surface
2410
2484
+
Leu
TAA
[ENA]
¢þ
>WENV182644768
OJLY01000328
[OJLY] metagenome; surface
2410
2484
+
Leu
TAA
[ENA]
¢þ
>WENV182671542
OJNM01000154
[OJNM] metagenome; surface
2410
2484
+
Leu
TAA
[ENA]
¢þ
>C08003914
AM942444
Actinomycetota
Corynebacterium urealyticum DSM 7109 [AM942444]
710583
710659
+
Leu
TAA
[Ensembl]
¡û
>WENV170650385
JRYD01133576
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
275
199
-
Leu
TAA
[ENA]
¢þ
>C181029775
CP018020
Actinomycetota
Mycobacterium avium subsp. hominissuis OCU873s_P7_4s [CP018020]
1041075
1041150
+
Leu
TAA
-
¡û
>C181122690
CP025779
Actinomycetota
Mycobacterium marinum 1218R [CP025779]
5299640
5299565
-
Leu
TAA
-
¡û
>C181226715
LT906481
Actinomycetota
Corynebacterium urealyticum NCTC12011 [LT906481]
21514
21588
+
Leu
TAA
-
¡û
>C191022857
CP022927
Actinomycetota
Mycobacterium shigaense SCY [CP022927]
4222021
4221947
-
Leu
TAA
-
¡û
>C191109389
CP033688
Actinomycetota
Mycobacterium avium subsp. paratuberculosis Telford [CP033688]
2799777
2799702
-
Leu
TAA
-
¡û
>W09105637
AAQC01000010
Actinomycetota
Mycobacterium sp. JLS [AAQC]
80633
80559
-
Leu
TAA
[ENA]
¡û
>W09117013
ACBV01000035
Actinomycetota
Mycobacterium kansasii ATCC 12478 [ACBV]
52685
52609
-
Leu
TAA
[ENA]
¡û
>W1910370926
FUEZ01000004
Actinomycetota
Mycobacterium numidiamassiliense AB215 [FUEZ]
1713432
1713507
+
Leu
TAA
[ENA]
¡û
>W1910417622
FVKY01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 60 [FVKY]
695397
695322
-
Leu
TAA
[ENA]
¡û
>W1910469847
FWYQ01000031
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
113399
113473
+
Leu
TAA
[ENA]
¡û
>W1910598887
LBGZ01000043
Actinomycetota
Mycobacterium avium subsp. hominissuis OCU466 [LBGZ]
170373
170298
-
Leu
TAA
[ENA]
¡û
>W1910658319
MBFP01000081
Actinomycetota
Mycobacterium avium subsp. hominissuis CAM78 [MBFP]
19078
19003
-
Leu
TAA
[ENA]
¡û
>W1910989908
NKQY01000001
Actinomycetota
Mycobacterium kansasii K14 [NKQY]
1847165
1847090
-
Leu
TAA
[ENA]
¡û
>W1910990045
NKRB01000001
Actinomycetota
Mycobacterium kansasii 14_15 [NKRB]
1996217
1996143
-
Leu
TAA
[ENA]
¡û
>W1911185286
NQSJ01000003
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 244 [NQSJ]
223118
223193
+
Leu
TAA
[ENA]
¡û
>W1911241595
NSFB01000003
Actinomycetota
Mycobacterium avium FLAC0216 [NSFB]
752915
752990
+
Leu
TAA
[ENA]
¡û
>W1911717713
QQQF01000028
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
15503
15428
-
Leu
TAA
[ENA]
¡û
>W1810070642
PEDB01000137
Actinomycetota
Mycobacterium marinum DSM 43519 [PEDB]
2804
2878
+
Leu
TAA
[ENA]
¡û
>W1810187465
PKHP01000008
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
38080
38006
-
Leu
TAA
[ENA]
¡û
>W1810187489
PKHQ01000001
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
328297
328223
-
Leu
TAA
[ENA]
¡û
>W1810234021
PPEA01000630
Actinomycetota
Mycobacterium talmoniae ATCC BAA-2683 [PPEA]
2557
2632
+
Leu
TAA
[ENA]
¡û
>W1810272651
PSNM01000189
Actinomycetota
Mycobacterium avium subsp. hominissuis MAH-P-4557/08 [PSNM]
71171
71246
+
Leu
TAA
[ENA]
¡û
>W1810338912
PUTX01000989
Actinomycetota
Mycobacterium sp. ITM-2016-00316 [PUTX]
19664
19738
+
Leu
TAA
[ENA]
¡û
>C151001960
AP014547
Actinomycetota
Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300 [AP014547]
1191055
1191131
+
Leu
TAA
[Ensembl]
¡û
>C151064743
CP010113
Actinomycetota
Mycobacterium avium subsp. paratuberculosis E1 [CP010113]
3127057
3126981
-
Leu
TAA
[Ensembl]
¡û
>W1510544495
CSTD01000001
Actinomycetota
Mycobacterium bohemicum DSM 44277 [CSTD]
1506620
1506696
+
Leu
TAA
[ENA]
¡û
>W1510562371
CTEC01000001
Actinomycetota
Mycobacterium europaeum CSUR P1344 [CTEC]
189506
189430
-
Leu
TAA
[ENA]
¡û
>W1510562476
CTEE01000001
Actinomycetota
Mycobacterium lentiflavum CSUR P1491 [CTEE]
5037025
5036951
-
Leu
TAA
[ENA]
¡û
>W1510651796
CVTB01000280
Actinomycetota
Mycolicibacterium malmesburyense WCM 7299 [CVTB]
25952
26026
+
Leu
TAA
[ENA]
¡û
>W1511186122
JMEP01000011
Actinomycetota
Rhodococcus fascians LMG 3605 [JMEP]
309602
309676
+
Leu
TAA
[ENA]
¡û
>W11163552
AFHX01000038
Actinomycetota
Mycobacterium avium subsp. paratuberculosis CLIJ623 [AFHX]
8497
8421
-
Leu
TAA
[ENA]
¡û
>W11169977
AFPC01000071
Actinomycetota
Mycobacterium avium subsp. paratuberculosis Pt139 [AFPC]
2245
2321
+
Leu
TAA
[ENA]
¡û
>W11170232
AFPH01000343
Actinomycetota
Mycobacterium avium subsp. paratuberculosis Pt155 [AFPH]
8587
8511
-
Leu
TAA
[ENA]
¡û
>C161088864
CP015495
Actinomycetota
Mycobacterium avium subsp. paratuberculosis MAP/TANUVAS/TN/India/2008 [CP015495]
1049279
1049355
+
Leu
TAA
-
¡û
>W121007515
AGAK01000072
Actinomycetota
Mycobacterium avium subsp. paratuberculosis 1281 [AGAK]
1534
1458
-
Leu
TAA
[ENA]
¡û
>W121007732
AGAO01000328
Actinomycetota
Mycobacterium avium subsp. paratuberculosis Env 210 [AGAO]
10434
10358
-
Leu
TAA
[ENA]
¡û
>W121007743
AGAP01000055
Actinomycetota
Mycobacterium avium subsp. avium DT 78 [AGAP]
1534
1458
-
Leu
TAA
[ENA]
¡û
>W121101411
AKVF01000003
Actinomycetota
Mycobacteroides abscessus CCUG 48898 [AKVF]
407805
407881
+
Leu
TAA
[ENA]
¡û
>W121125092
BAFT01000080
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
74076
74002
-
Leu
TAA
[ENA]
¡û
>W1610050590
BBFZ01003164
Actinomycetota
Rhodococcus sp. JCM 3009 [BBFZ]
257
331
+
Leu
TAA
[ENA]
¡û
>W1610436839
FJVG01000021
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
418487
418561
+
Leu
TAA
[ENA]
¡û
>W1610460661
FKJL01000167
Actinomycetota
Mycobacterium avium subsp. hominissuis [FKJL]
21642
21566
-
Leu
TAA
[ENA]
¡û
>W1610576746
LATB01000155
Actinomycetota
Mycobacterium sp. UM_3 [LATB]
2703
2777
+
Leu
TAA
[ENA]
¡û
>W1610750854
LNBR01000004
Actinomycetota
Mycobacterium avium subsp. hominissuis [LNBR]
89824
89900
+
Leu
TAA
[ENA]
¡û
>W1610855140
LQIV01000018
Actinomycetota
Mycobacterium sp. IS-1742 [LQIV]
78374
78298
-
Leu
TAA
[ENA]
¡û
>W1610919647
LSRH01000021
Actinomycetota
Tsukamurella pulmonis [LSRH]
250475
250551
+
Leu
TAA
[ENA]
¡û
>W1610919685
LSRI01000011
Actinomycetota
Tsukamurella pulmonis [LSRI]
254648
254724
+
Leu
TAA
[ENA]
¡û
>W1610996181
LXGG01000020
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
143226
143302
+
Leu
TAA
[ENA]
¡û
>W1611035764
LZIE01000026
Actinomycetota
Mycobacterium sp. 852002-53434_SCH5985345 [LZIE]
109868
109792
-
Leu
TAA
[ENA]
¡û
>W1611036138
LZIL01000078
Actinomycetota
Mycobacterium sp. 852014-52450_SCH5900713 [LZIL]
388653
388577
-
Leu
TAA
[ENA]
¡û
>W1611037166
LZJH01000061
Actinomycetota
Mycobacterium sp. E2699 [LZJH]
2728
2804
+
Leu
TAA
[ENA]
¡û
>W1611037477
LZJN01000220
Actinomycetota
Mycobacterium sp. E183 [LZJN]
2138
2062
-
Leu
TAA
[ENA]
¡û
>W1611038026
LZJZ01000088
Actinomycetota
Mycobacterium sp. E2733 [LZJZ]
17183
17259
+
Leu
TAA
[ENA]
¡û
>W1611039085
LZKW01000032
Actinomycetota
Mycobacterium colombiense [LZKW]
4854
4930
+
Leu
TAA
[ENA]
¡û
>W1611039241
LZKZ01000224
Actinomycetota
Mycobacterium colombiense [LZKZ]
26223
26299
+
Leu
TAA
[ENA]
¡û
>W1611039538
LZLF01000140
Actinomycetota
Mycobacterium asiaticum [LZLF]
17921
17845
-
Leu
TAA
[ENA]
¡û
>W1611040857
LZMH01000037
Actinomycetota
Mycobacterium asiaticum [LZMH]
202451
202525
+
Leu
TAA
[ENA]
¡û
>W1611062962
MBEE01000201
Actinomycetota
Mycobacterium malmoense [MBEE]
24843
24769
-
Leu
TAA
[ENA]
¡û
>W1710046989
BBFZ01003164
Actinomycetota
Rhodococcus sp. JCM 3009 [BBFZ]
257
331
+
Leu
TAA
[ENA]
¡û
>W1710085090
BDNB01000068
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDNB]
10300
10224
-
Leu
TAA
[ENA]
¡û
>W1710085127
BDNC01000095
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDNC]
2614
2690
+
Leu
TAA
[ENA]
¡û
>W1710086248
BDNZ01000053
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDNZ]
57854
57778
-
Leu
TAA
[ENA]
¡û
>W1710086421
BDOC01000194
Actinomycetota
Mycobacterium avium subsp. hominissuis [BDOC]
2615
2691
+
Leu
TAA
[ENA]
¡û
>W1710436575
FJVG01000021
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
418487
418561
+
Leu
TAA
[ENA]
¡û
>W1710460225
FKJL01000167
Actinomycetota
Mycobacterium avium subsp. hominissuis [FKJL]
21642
21566
-
Leu
TAA
[ENA]
¡û
>W1710527738
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
1270669
1270593
-
Leu
TAA
[ENA]
¡û
>W1710534334
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
1954202
1954278
+
Leu
TAA
[ENA]
¡û
>W1710595983
FTMH01000009
Actinomycetota
Corynebacterium afermentans [FTMH]
54474
54550
+
Leu
TAA
[ENA]
¡û
>W1710695235
LATB01000155
Actinomycetota
Mycobacterium sp. UM_3 [LATB]
2703
2777
+
Leu
TAA
[ENA]
¡û
>W1710742512
LGSC01000049
Actinomycetota
Mycobacterium avium subsp. paratuberculosis [LGSC]
2691
2767
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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