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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.209802 (20 seq.)
>W1711078526
LSMZ01000006
Bacillota
Clostridium sp. link-BC1 [LSMZ]
129267
129343
+
Met
CAT
[ENA]
¡û
>W1711222531
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
3577163
3577239
+
Met
CAT
[ENA]
¡û
>C007128
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
3163524
3163600
+
Met
CAT
[Ensembl]
¡û
>W141067350
ASAA01000007
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
1052972
1053048
+
Met
CAT
[ENA]
¡û
>W08011392
ABVG01000033
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
7842
7769
-
Met
CAT
[ENA]
¡û
>W141233360
BAVR01000006
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
25863
25939
+
Met
CAT
[ENA]
¡û
>WENV170008031
AMZC01000447
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
7114
7190
+
Met
CAT
[ENA]
¢þ
>WENV170684247
LFRM01028761
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
24009
24085
+
Met
CAT
[ENA]
¢þ
>W09100468
AABG04000048
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
13322
13246
-
Met
CAT
[ENA]
¡û
>W09135635
ACVX01000001
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
154268
154192
-
Met
CAT
[ENA]
¡û
>W1911496667
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
158598
158522
-
Met
CAT
[ENA]
¡û
>W1911572306
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
294043
294119
+
Met
CAT
[ENA]
¡û
>C11106458
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
293948
294024
+
Met
CAT
[Ensembl]
¡û
>C121005027
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
412027
412103
+
Met
CAT
[Ensembl]
¡û
>C161060767
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
294043
294119
+
Met
CAT
-
¡û
>C161097519
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
293866
293942
+
Met
CAT
-
¡û
>W121061315
AJGS01000065
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
142255
142179
-
Met
CAT
[ENA]
¡û
>W121061372
AJGT01000047
Bacillota
Acetivibrio thermocellus YS [AJGT]
203002
202926
-
Met
CAT
[ENA]
¡û
>W1610605574
LFSC01000006
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
24009
24085
+
Met
CAT
[ENA]
¡û
>W1710726861
LFSC01000006
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
24009
24085
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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