This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.210541 (51 seq.)
>W1711135611
LUZF01000042
Bacteroidota
Bacteroidales bacterium Bact_14 [LUZF]
19810
19732
-
Met
CAT
[ENA]
¡û
>W1711135639
LUZG01000417
Bacteroidota
Bacteroidales bacterium Bact_15 [LUZG]
919
995
+
Met
CAT
[ENA]
¡û
>W1711135646
LUZH01000043
Bacteroidota
Bacteroidales bacterium Bact_16 [LUZH]
1250
1326
+
Met
CAT
[ENA]
¡û
>WENV180001109
FLNX01000009
[FLNX] bioreactor metagenome; Moose rumen
49064
48990
-
Met
CAT
[ENA]
¡û
>WENV180001937
FLNX01003853
[FLNX] bioreactor metagenome; Moose rumen
19134
19208
+
Met
CAT
[ENA]
¡û
>WENV180002327
FLNY01000982
[FLNY] bioreactor metagenome; Moose rumen
2129
2053
-
Met
CAT
[ENA]
¡û
>WENV180002559
FLNY01002460
[FLNY] bioreactor metagenome; Moose rumen
15193
15267
+
Met
CAT
[ENA]
¡û
>WENV180003304
FLNZ01002914
[FLNZ] bioreactor metagenome; Moose rumen
16693
16617
-
Met
CAT
[ENA]
¡û
>WENV180003537
FLNZ01005291
[FLNZ] bioreactor metagenome; Moose rumen
7147
7073
-
Met
CAT
[ENA]
¡û
>WENV180662099
OCVV011060163
[OCVV] gut metagenome; gut
2972
2898
-
Met
CAT
[ENA]
¡û
>WENV180662100
OCVV011060163
[OCVV] gut metagenome; gut
2972
2898
-
Met
CAT
[ENA]
¡û
>WENV180663117
OCVV011109253
[OCVV] gut metagenome; gut
1664
1590
-
Met
CAT
[ENA]
¡û
>WENV180663118
OCVV011109253
[OCVV] gut metagenome; gut
1664
1590
-
Met
CAT
[ENA]
¡û
>WENV180665509
OCVV011189444
[OCVV] gut metagenome; gut
3581
3505
-
Met
CAT
[ENA]
¡û
>WENV180665510
OCVV011189444
[OCVV] gut metagenome; gut
3581
3505
-
Met
CAT
[ENA]
¡û
>WENV180667229
OCVV011230691
[OCVV] gut metagenome; gut
229
155
-
Met
CAT
[ENA]
¡û
>WENV180667230
OCVV011230691
[OCVV] gut metagenome; gut
229
155
-
Met
CAT
[ENA]
¡û
>WENV180669207
OCVV011277057
[OCVV] gut metagenome; gut
947
873
-
Met
CAT
[ENA]
¡û
>WENV180669208
OCVV011277057
[OCVV] gut metagenome; gut
947
873
-
Met
CAT
[ENA]
¡û
>WENV180673204
OCVV011337320
[OCVV] gut metagenome; gut
123
48
-
Met
CAT
[ENA]
¡û
>WENV180673206
OCVV011337320
[OCVV] gut metagenome; gut
123
48
-
Met
CAT
[ENA]
¡û
>WENV180674146
OCVV011348417
[OCVV] gut metagenome; gut
990
1066
+
Met
CAT
[ENA]
¡û
>WENV180674148
OCVV011348417
[OCVV] gut metagenome; gut
990
1066
+
Met
CAT
[ENA]
¡û
>WENV180681376
OCVV012763385
[OCVV] gut metagenome; gut
77
3
-
Met
CAT
[ENA]
¡û
>WENV180681378
OCVV012763385
[OCVV] gut metagenome; gut
77
3
-
Met
CAT
[ENA]
¡û
>WENV180682978
OCVV012833707
[OCVV] gut metagenome; gut
418
342
-
Met
CAT
[ENA]
¡û
>WENV180682980
OCVV012833707
[OCVV] gut metagenome; gut
418
342
-
Met
CAT
[ENA]
¡û
>WENV180684879
OCVV012863517
[OCVV] gut metagenome; gut
268
194
-
Met
CAT
[ENA]
¡û
>WENV180684880
OCVV012863517
[OCVV] gut metagenome; gut
268
194
-
Met
CAT
[ENA]
¡û
>WENV180686278
OCVV012884063
[OCVV] gut metagenome; gut
10809
10733
-
Met
CAT
[ENA]
¡û
>WENV180686280
OCVV012884063
[OCVV] gut metagenome; gut
10809
10733
-
Met
CAT
[ENA]
¡û
>WENV181459781
OGEL01000622
[OGEL] metagenome; Human gut stool
23768
23842
+
Met
CAT
[ENA]
¡û
>WENV182013026
OHBN01003467
[OHBN] human gut metagenome; feces
619
693
+
Met
CAT
[ENA]
¡û
>WENV182025299
OHCI01000895
[OHCI] human gut metagenome; feces
1898
1824
-
Met
CAT
[ENA]
¡û
>WENV182028252
OHCO01042087
[OHCO] human gut metagenome; feces
242
168
-
Met
CAT
[ENA]
¡û
>WENV182224764
OHRC01004345
[OHRC] human gut metagenome; feces
425
499
+
Met
CAT
[ENA]
¡û
>WENV182239491
OHSB01001992
[OHSB] human gut metagenome; feces
4391
4465
+
Met
CAT
[ENA]
¡û
>WENV182259638
OHTI01000109
[OHTI] human gut metagenome; feces
48065
47991
-
Met
CAT
[ENA]
¡û
>WENV182292568
OHWB01000338
[OHWB] human gut metagenome; feces
11859
11933
+
Met
CAT
[ENA]
¡û
>WENV182369134
OICR01000142
[OICR] human gut metagenome; feces
7029
7103
+
Met
CAT
[ENA]
¡û
>WENV182513095
OIWM01000054
[OIWM] human gut metagenome; faeces
76716
76790
+
Met
CAT
[ENA]
¡û
>WENV182606798
OJJU01000047
[OJJU] metagenome; faeces
34121
34047
-
Met
CAT
[ENA]
¡û
>WENV182892490
OKSI01000520
[OKSI] human gut metagenome; feces
14537
14463
-
Met
CAT
[ENA]
¡û
>WENV170775600
LXOW01065997
[LXOW] bovine gut metagenome; Cow rumen
74
150
+
Met
CAT
[ENA]
¡û
>WENV170777372
LXOW01275417
[LXOW] bovine gut metagenome; Cow rumen
44
118
+
Met
CAT
[ENA]
¡û
>WENV170778042
LXOW01352204
[LXOW] bovine gut metagenome; Cow rumen
1414
1488
+
Met
CAT
[ENA]
¡û
>WENV170778129
LXOW01361970
[LXOW] bovine gut metagenome; Cow rumen
680
756
+
Met
CAT
[ENA]
¡û
>W1610946731
LUZF01000042
Bacteroidota
Bacteroidales bacterium Bact_14 [LUZF]
19810
19732
-
Met
CAT
[ENA]
¡û
>W1610946759
LUZG01000417
Bacteroidota
Bacteroidales bacterium Bact_15 [LUZG]
919
995
+
Met
CAT
[ENA]
¡û
>W1610946766
LUZH01000043
Bacteroidota
Bacteroidales bacterium Bact_16 [LUZH]
1250
1326
+
Met
CAT
[ENA]
¡û
>W1710604105
FUZR01000003
Bacteroidota
Bacteroidales bacterium WCE2004 [FUZR]
45275
45199
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK