This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.210546 (35 seq.)
>W1710876756
LMPM01000002
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
72245
72161
-
Leu
CAA
[ENA]
¡û
>W1710894022
LNFI01000006
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
4279
4195
-
Leu
CAA
[ENA]
¡û
>W1711384701
MEDI01000322
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
31951
31867
-
Leu
CAA
[ENA]
¡û
>W131162095
AQYH01000007
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
397055
397139
+
Leu
CAA
[ENA]
¡û
>W131219292
ATYL01000001
Alphaproteobacteria
Geminicoccus roseus DSM 18922 [ATYL]
920984
921068
+
Leu
CAA
[ENA]
¡û
>WENV180018919
FTBC01000022
[FTBC] metagenome; soil
6161
6077
-
Leu
CAA
[ENA]
¡û
>WENV181388974
OFRM01061895
[OFRM] wastewater metagenome; Exp Tend VB 0WW
210
126
-
Leu
CAA
[ENA]
¡û
>WENV170577466
FSSH01000037
[FSSH] freshwater metagenome; drinking water
317370
317454
+
Leu
CAA
[ENA]
¡û
>WENV170577492
FSSH01000075
[FSSH] freshwater metagenome; drinking water
153949
154033
+
Leu
CAA
[ENA]
¡û
>WENV170707064
LNAP01012084
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
589
673
+
Leu
CAA
[ENA]
¡û
>WENV170709302
LNFM01000251
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
164051
164135
+
Leu
CAA
[ENA]
¡û
>W1911802610
QYUL01000001
Alphaproteobacteria
Azospirillum sp. K2W22B-5 [QYUL]
1801547
1801631
+
Leu
CAA
[ENA]
¡û
>W2010105782
BJZV01000002
Alphaproteobacteria
Methylobacterium gnaphalii NBRC 107716 [BJZV]
225468
225384
-
Leu
CAA
[ENA]
¡û
>W2010712815
JACHOR010000001
Alphaproteobacteria
Brevundimonas variabilis DSM 4737 [JACHOR]
408308
408392
+
Leu
CAA
[ENA]
¡û
>W2010724678
JACIDN010000003
Alphaproteobacteria
Methylobacterium brachythecii DSM 24105 [JACIDN]
439942
440026
+
Leu
CAA
[ENA]
¡û
>W2011344241
QYUL01000001
Alphaproteobacteria
Azospirillum sp. K2W22B-5 [QYUL]
1801547
1801631
+
Leu
CAA
[ENA]
¡û
>W2011497396
RXMA01000011
Alphaproteobacteria
Azospirillum sp. L-25-5w-1 [RXMA]
46289
46373
+
Leu
CAA
[ENA]
¡û
>W2011511871
RZIJ01000002
Alphaproteobacteria
Azospirillum doebereinerae GSF71 [RZIJ]
179229
179313
+
Leu
CAA
[ENA]
¡û
>W2012332876
WIDQ01000017
Alphaproteobacteria
Niveispirillum sp. SYP-B3756 [WIDQ]
4811
4727
-
Leu
CAA
[ENA]
¡û
>W2110028015
BMJQ01000015
Alphaproteobacteria
Aliidongia dinghuensis CGMCC 1.15725 [BMJQ]
133097
133013
-
Leu
CAA
[ENA]
¡û
>W2110137921
JAAEDH010000003
Alphaproteobacteria
Roseomonas arctica LMG 28251 [JAAEDH]
140754
140838
+
Leu
CAA
[ENA]
¡û
>W2110677577
JAIFZR010000005
Alphaproteobacteria
Azospirillum agricola R1C [JAIFZR]
1657369
1657285
-
Leu
CAA
[ENA]
¡û
>C211017752
AP024269
Alphaproteobacteria
Kaistia sp. 32K [AP024269]
4221881
4221797
-
Leu
CAA
-
¡û
>C211140872
CP061035
Alphaproteobacteria
Sphingomonas aliaeris [CP061035]
1686003
1686087
+
Leu
CAA
-
¡û
>C211239349
CP067977
Alphaproteobacteria
Brevundimonas sp. GRTSA-9 [CP067977]
1497715
1497799
+
Leu
CAA
-
¡û
>C231463766
CP103057
Alphaproteobacteria
Sphingomonas sp. ZFBP2030 [CP103057]
4086582
4086666
+
Leu
CAA
-
¡û
>C231620209
CP119318
Alphaproteobacteria
Kaistia sp. [CP119318]
183234
183150
-
Leu
CAA
-
¡û
>W2310013069
BPQK01000034
Alphaproteobacteria
Methylobacterium gnaphalii DSM 24027 [BPQK]
72580
72496
-
Leu
CAA
[ENA]
¡û
>W2310026274
BSPG01000001
Alphaproteobacteria
Methylobacterium brachythecii NBRC 107710 [BSPG]
322872
322956
+
Leu
CAA
[ENA]
¡û
>W1610739102
LMPM01000002
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
72245
72161
-
Leu
CAA
[ENA]
¡û
>W1610754288
LNFI01000006
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
4279
4195
-
Leu
CAA
[ENA]
¡û
>W1710527766
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
7606713
7606629
-
Leu
CAA
[ENA]
¡û
>W1710535680
FNSS01000001
Alphaproteobacteria
Rhizobiales bacterium GAS188 [FNSS]
4008959
4009043
+
Leu
CAA
[ENA]
¡û
>W1710535987
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
8376016
8375932
-
Leu
CAA
[ENA]
¡û
>W1710609160
FXBR01000005
Alphaproteobacteria
Azospirillum lipoferum [FXBR]
1657369
1657285
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK