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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.210553 (15 seq.)
>W1711666467
MRBY01000026
Cyanobacteriota
[Limnothrix rosea] IAM M-220 IAM M-220 [MRBY]
1225
1151
-
Arg
CCG
[ENA]
¡û
>C171127283
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
1252798
1252725
-
Arg
CCG
-
¡û
>C025256
CT971583
Cyanobacteriota
Synechococcus sp. WH 7803 [CT971583]
464751
464824
+
Arg
CCG
[Ensembl]
¡û
>C025320
BX548020
Cyanobacteriota
Parasynechococcus marenigrum [BX548020]
1946774
1946701
-
Arg
CCG
[Ensembl]
¡û
>WENV180396311
OBPU01115662
[OBPU] marine metagenome; ENVO:00002010
159
84
-
Arg
CCG
[ENA]
¡û
>WENV180592424
OCOW01005827
[OCOW] marine metagenome; Sterivex cartridges
578
503
-
Arg
CCG
[ENA]
¡û
>WENV183700326
OZSS01181752
[OZSS] metagenome; Seawater sample
385
460
+
Arg
CCG
[ENA]
¡û
>WENV170118146
CENJ01047376
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1240
1315
+
Arg
CCG
[ENA]
¡û
>WENV170323872
CESS01032669
[CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
516
591
+
Arg
CCG
[ENA]
¡û
>W1911741948
QVFV01000003
Cyanobacteriota
Halomicronema excentricum str. Lakshadweep [QVFV]
265539
265466
-
Arg
CCG
[ENA]
¡û
>W2011306669
QVFV01000003
Cyanobacteriota
Halomicronema excentricum str. Lakshadweep [QVFV]
265539
265466
-
Arg
CCG
[ENA]
¡û
>W2110262208
JACSWC010000423
Cyanobacteriota
Halomicronema sp. CCY15110 [JACSWC]
33870
33943
+
Arg
CCG
[ENA]
¡û
>C211073209
CP047955
Cyanobacteriota
Synechococcus sp. A18-46.1 [CP047955]
1965083
1965008
-
Arg
CCG
-
¡û
>W1511400855
JTHE01000274
Cyanobacteriota
Lyngbya confervoides BDU141951 [JTHE]
2582533
2582460
-
Arg
CCG
[ENA]
¡û
>C131010446
CP003946
Cyanobacteriota
[Leptolyngbya] sp. PCC 7376 [CP003946]
1976774
1976848
+
Arg
CCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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