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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.210925 (85 seq.)
>W1710872891
LMMI01000056
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
145137
145213
+
Arg
TCT
[ENA]
¡û
>W1710872967
LMMK01000020
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
64473
64549
+
Arg
TCT
[ENA]
¡û
>W1710873200
LMMP01000049
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
247149
247225
+
Arg
TCT
[ENA]
¡û
>W1710873462
LMMU01000007
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
9589
9513
-
Arg
TCT
[ENA]
¡û
>W1710873569
LMMW01000061
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
299097
299021
-
Arg
TCT
[ENA]
¡û
>W1710873587
LMMX01000004
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
89099
89023
-
Arg
TCT
[ENA]
¡û
>W1710873775
LMNB01000001
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
295667
295591
-
Arg
TCT
[ENA]
¡û
>W1710873865
LMND01000001
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
110559
110483
-
Arg
TCT
[ENA]
¡û
>W1710874159
LMNJ01000014
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
41676
41600
-
Arg
TCT
[ENA]
¡û
>W1710877779
LMQK01000001
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
109907
109831
-
Arg
TCT
[ENA]
¡û
>W1710878533
LMRA01000012
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
354885
354809
-
Arg
TCT
[ENA]
¡û
>W1710878637
LMRC01000033
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
149538
149614
+
Arg
TCT
[ENA]
¡û
>W1710878731
LMRE01000043
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
130058
130134
+
Arg
TCT
[ENA]
¡û
>W131166751
ARCS01000002
Alphaproteobacteria
Methylobacterium sp. 77 [ARCS]
238711
238787
+
Arg
TCT
[ENA]
¡û
>W141220755
AZYE01000329
Alphaproteobacteria
Microvirga lupini [AZYE]
44575
44499
-
Arg
TCT
[ENA]
¡û
>W141276730
JAEA01000008
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
169224
169148
-
Arg
TCT
[ENA]
¡û
>WENV170577927
FSSH01003261
[FSSH] freshwater metagenome; drinking water
5945
5869
-
Arg
TCT
[ENA]
¡û
>C181020335
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
257336
257260
-
Arg
TCT
-
¡û
>W1911708546
QOWC01000004
Alphaproteobacteria
Methylobacterium sp. MIMD6 [QOWC]
1236
1312
+
Arg
TCT
[ENA]
¡û
>W1810057193
PDHT01000003
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
2897
2821
-
Arg
TCT
[ENA]
¡û
>W1810487199
QAYK01000002
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
240343
240419
+
Arg
TCT
[ENA]
¡û
>SRA1015429
SRR023846.53178
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
142
66
-
Arg
TCT
[SRA]
>SRA1015479
SRR023846.78588
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
105
29
-
Arg
TCT
[SRA]
>SRA1015926
SRR023846.265986
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
142
66
-
Arg
TCT
[SRA]
>SRA1016253
SRR023846.420512
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
157
233
+
Arg
TCT
[SRA]
>SRA1016507
SRR023846.536038
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
172
96
-
Arg
TCT
[SRA]
>W2010105724
BJZT01000042
Alphaproteobacteria
Methylobacterium haplocladii NBRC 107714 [BJZT]
1830
1754
-
Arg
TCT
[ENA]
¡û
>W2010439692
JAAAXI010000010
Alphaproteobacteria
Microvirga sp. SYSU G3D207 [JAAAXI]
82827
82903
+
Arg
TCT
[ENA]
¡û
>W2010439751
JAAAXJ010000009
Alphaproteobacteria
Microvirga sp. SYSU G3D203 [JAAAXJ]
68379
68303
-
Arg
TCT
[ENA]
¡û
>W2010609884
JABMLM010000340
Alphaproteobacteria
Microvirga sp. R24 [JABMLM]
29944
30020
+
Arg
TCT
[ENA]
¡û
>W2010680669
JACDXJ010000001
Alphaproteobacteria
Microvirga sp. Marseille-Q2068 [JACDXJ]
2616406
2616482
+
Arg
TCT
[ENA]
¡û
>W2010714704
JACHWB010000003
Alphaproteobacteria
Microvirga lupini AT3.9 [JACHWB]
70580
70504
-
Arg
TCT
[ENA]
¡û
>W2010724123
JACIDC010000013
Alphaproteobacteria
Microvirga flocculans DSM 15743 [JACIDC]
101739
101815
+
Arg
TCT
[ENA]
¡û
>W2011281759
QOWC01000004
Alphaproteobacteria
Methylobacterium sp. MIMD6 [QOWC]
1236
1312
+
Arg
TCT
[ENA]
¡û
>W2012107925
VOSK01000084
Alphaproteobacteria
Microvirga tunisiensis Lmie10 [VOSK]
855
931
+
Arg
TCT
[ENA]
¡û
>W2012126654
VRUV01000001
Alphaproteobacteria
Methylobacterium sp. WL116 [VRUV]
108004
108080
+
Arg
TCT
[ENA]
¡û
>W2012126858
VRUZ01000005
Alphaproteobacteria
Methylobacterium sp. WL69 [VRUZ]
74057
74133
+
Arg
TCT
[ENA]
¡û
>W2012127015
VRVC01000019
Alphaproteobacteria
Methylobacterium sp. WL19 [VRVC]
11004
11080
+
Arg
TCT
[ENA]
¡û
>W2012127221
VRVG01000042
Alphaproteobacteria
Methylobacterium sp. WL7 [VRVG]
17322
17398
+
Arg
TCT
[ENA]
¡û
>W2012127268
VRVH01000114
Alphaproteobacteria
Methylobacterium sp. WL6 [VRVH]
2995
3071
+
Arg
TCT
[ENA]
¡û
>W2012127314
VRVI01000024
Alphaproteobacteria
Methylobacterium sp. WL2 [VRVI]
54064
53988
-
Arg
TCT
[ENA]
¡û
>W2012221248
VZZJ01000010
Alphaproteobacteria
Methylobacterium sp. YIM 132548 [VZZJ]
29020
29096
+
Arg
TCT
[ENA]
¡û
>W2110283064
JACXAB010000004
Alphaproteobacteria
Microvirga sp. BT688 [JACXAB]
343893
343969
+
Arg
TCT
[ENA]
¡û
>W2110325618
JADIJP010000006
Alphaproteobacteria
Methylobacterium sp. SD274 [JADIJP]
6074
6150
+
Arg
TCT
[ENA]
¡û
>W2110484216
JAFEMD010000008
Alphaproteobacteria
Microvirga sp. BT689 [JAFEMD]
148343
148419
+
Arg
TCT
[ENA]
¡û
>W2110563291
JAGPUP010000547
Alphaproteobacteria
Microvirga sp. HBU67558 [JAGPUP]
57657
57581
-
Arg
TCT
[ENA]
¡û
>C201116451
CP042823
Alphaproteobacteria
Methylobacterium sp. WL1 [CP042823]
4888609
4888685
+
Arg
TCT
-
¡û
>C211259053
CP069354
Alphaproteobacteria
Microvirga sp. VF16 [CP069354]
2425867
2425943
+
Arg
TCT
-
¡û
>W2110716570
JAJALK010000002
Alphaproteobacteria
Methylobacterium brachiatum B0021 [JAJALK]
487170
487094
-
Arg
TCT
[ENA]
¡û
>W2110752780
NKUG01000064
Alphaproteobacteria
Methylobacterium bullatum LMG 24788 [NKUG]
46922
46846
-
Arg
TCT
[ENA]
¡û
>C231459547
CP102845
Alphaproteobacteria
Microvirga sp. R24 [CP102845]
3013938
3013862
-
Arg
TCT
-
¡û
>C231516266
CP107532
Alphaproteobacteria
Methylobacterium sp. FF17 [CP107532]
240205
240129
-
Arg
TCT
-
¡û
>W2110775348
VMOA01000032
Alphaproteobacteria
Methylobacterium sp. W2 [VMOA]
14249
14325
+
Arg
TCT
[ENA]
¡û
>C241358881
CP141048
Alphaproteobacteria
Microvirga lotononidis HAMBI_3237 [CP141048]
4078869
4078793
-
Arg
TCT
-
¡û
>W2310012736
BPQD01000003
Alphaproteobacteria
Methylobacterium adhaesivum DSM 17169 [BPQD]
126736
126660
-
Arg
TCT
[ENA]
¡û
>W2310012846
BPQF01000015
Alphaproteobacteria
Methylobacterium bullatum DSM 21893 [BPQF]
27470
27546
+
Arg
TCT
[ENA]
¡û
>W2310012922
BPQH01000006
Alphaproteobacteria
Methylobacterium crusticola KCTC 52305 [BPQH]
96577
96501
-
Arg
TCT
[ENA]
¡û
>W2310013195
BPQN01000011
Alphaproteobacteria
Methylobacterium haplocladii DSM 24195 [BPQN]
5613
5689
+
Arg
TCT
[ENA]
¡û
>W2310013299
BPQP01000018
Alphaproteobacteria
Methylobacterium iners DSM 19015 [BPQP]
85682
85758
+
Arg
TCT
[ENA]
¡û
>W2310013783
BPRA01000002
Alphaproteobacteria
Methylobacterium thuringiense DSM 23674 [BPRA]
173110
173186
+
Arg
TCT
[ENA]
¡û
>W2310013826
BPRB01000048
Alphaproteobacteria
Methylobacterium trifolii DSM 23632 [BPRB]
4365
4289
-
Arg
TCT
[ENA]
¡û
>W121081107
AKFK01000023
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
4245
4169
-
Arg
TCT
[ENA]
¡û
>W1610679897
LKKO01000025
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
159933
160009
+
Arg
TCT
[ENA]
¡û
>W1610735138
LMMG01000035
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
11638
11714
+
Arg
TCT
[ENA]
¡û
>W1610735237
LMMI01000056
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
145137
145213
+
Arg
TCT
[ENA]
¡û
>W1610735313
LMMK01000020
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
64473
64549
+
Arg
TCT
[ENA]
¡û
>W1610735546
LMMP01000049
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
247149
247225
+
Arg
TCT
[ENA]
¡û
>W1610735699
LMMS01000012
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
148743
148819
+
Arg
TCT
[ENA]
¡û
>W1610735808
LMMU01000007
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
9589
9513
-
Arg
TCT
[ENA]
¡û
>W1610735915
LMMW01000061
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
299097
299021
-
Arg
TCT
[ENA]
¡û
>W1610735933
LMMX01000004
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
89099
89023
-
Arg
TCT
[ENA]
¡û
>W1610736121
LMNB01000001
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
295667
295591
-
Arg
TCT
[ENA]
¡û
>W1610736211
LMND01000001
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
110559
110483
-
Arg
TCT
[ENA]
¡û
>W1610736268
LMNE01000012
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
71350
71274
-
Arg
TCT
[ENA]
¡û
>W1610736345
LMNG01000002
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
88976
88900
-
Arg
TCT
[ENA]
¡û
>W1610736505
LMNJ01000014
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
41676
41600
-
Arg
TCT
[ENA]
¡û
>W1610736597
LMNL01000012
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
301535
301611
+
Arg
TCT
[ENA]
¡û
>W1610736996
LMNU01000012
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
243126
243202
+
Arg
TCT
[ENA]
¡û
>W1610740125
LMQK01000001
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
109907
109831
-
Arg
TCT
[ENA]
¡û
>W1610740879
LMRA01000012
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
354885
354809
-
Arg
TCT
[ENA]
¡û
>W1610740983
LMRC01000033
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
149538
149614
+
Arg
TCT
[ENA]
¡û
>W1610741077
LMRE01000043
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
130058
130134
+
Arg
TCT
[ENA]
¡û
>W1710535124
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
1907416
1907492
+
Arg
TCT
[ENA]
¡û
>W1710564987
FOQW01000031
Alphaproteobacteria
Methylobacterium brachiatum [FOQW]
13052
12976
-
Arg
TCT
[ENA]
¡û
>W1710568250
FOTK01000039
Alphaproteobacteria
Methylobacterium pseudosasicola [FOTK]
53219
53295
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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