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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211298 (46 seq.)
>WENV180154924
OAUU01001081
[OAUU] human gut metagenome; faeces
9434
9516
+
Tyr
GTA
[ENA]
¡û
>WENV180172141
OAVX01000318
[OAVX] human gut metagenome; faeces
17527
17609
+
Tyr
GTA
[ENA]
¡û
>WENV180194080
OAZX01000227
[OAZX] human gut metagenome; faeces
17527
17609
+
Tyr
GTA
[ENA]
¡û
>WENV180431698
OBWH01000521
[OBWH] human gut metagenome; faeces
1766
1684
-
Tyr
GTA
[ENA]
¡û
>WENV181795938
OGRT01001976
[OGRT] human gut metagenome; faeces
3562
3480
-
Tyr
GTA
[ENA]
¡û
>WENV181806899
OGSM01000421
[OGSM] human gut metagenome; fecal sample 1 from infant 7
4099
4017
-
Tyr
GTA
[ENA]
¡û
>WENV181817127
OGTM01000010
[OGTM] human gut metagenome; fecal sample 3 from infant 7
154586
154668
+
Tyr
GTA
[ENA]
¡û
>WENV182405816
OIEW01004564
[OIEW] human gut metagenome; fecal sample from infant N3_177 DOL 11
658
576
-
Tyr
GTA
[ENA]
¡û
>WENV182405930
OIEX01000019
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
16675
16593
-
Tyr
GTA
[ENA]
¡û
>WENV182410017
OIFK01000003
[OIFK] human gut metagenome; stool
450058
449976
-
Tyr
GTA
[ENA]
¡û
>WENV182960774
OKWK01000005
[OKWK] human gut metagenome; stool
159899
159981
+
Tyr
GTA
[ENA]
¡û
>WENV183024819
OLFT01001427
[OLFT] human gut metagenome; faeces
4775
4857
+
Tyr
GTA
[ENA]
¡û
>WENV183182790
OLPK01001316
[OLPK] human gut metagenome; faeces
16320
16238
-
Tyr
GTA
[ENA]
¡û
>WENV183189166
OLPQ01000736
[OLPQ] human gut metagenome; faeces
26398
26316
-
Tyr
GTA
[ENA]
¡û
>WENV183297145
OLSM01001021
[OLSM] human gut metagenome; faeces
1739
1821
+
Tyr
GTA
[ENA]
¡û
>WENV183306703
OLTA01000250
[OLTA] human gut metagenome; faeces
260
342
+
Tyr
GTA
[ENA]
¡û
>WENV183591524
OOCY01000208
[OOCY] human gut metagenome; human gut
45712
45794
+
Tyr
GTA
[ENA]
¡û
>WENV183596367
OODE01000179
[OODE] human gut metagenome; human gut
20920
21002
+
Tyr
GTA
[ENA]
¡û
>WENV170035716
CDYM01029056
[CDYM] gut metagenome; human stools
10255
10337
+
Tyr
GTA
[ENA]
¡û
>WENV170560378
CYGL01000977
[CYGL] human gut metagenome;
1316
1398
+
Tyr
GTA
[ENA]
¡û
>W141754811
JNWB01000014
Actinomycetota
Bifidobacterium longum subsp. infantis EK3 [JNWB]
77349
77431
+
Tyr
GTA
[ENA]
¡û
>W2010168003
CABFNK010000008
Actinomycetota
Bifidobacterium breve INIA P734 [CABFNK]
155252
155334
+
Tyr
GTA
[ENA]
¡û
>W2011432076
RJJM01000027
Actinomycetota
Bifidobacterium longum subsp. infantis Bi-26 [RJJM]
77421
77503
+
Tyr
GTA
[ENA]
¡û
>W2011588104
SHTQ01000008
Actinomycetota
Bifidobacterium longum subsp. longum MCC10212 [SHTQ]
58403
58321
-
Tyr
GTA
[ENA]
¡û
>W2011667635
SPFS01000011
Actinomycetota
Bifidobacterium longum BSD2780061688st2_H1 [SPFS]
54527
54445
-
Tyr
GTA
[ENA]
¡û
>W2012036757
VIBP01000012
Actinomycetota
Bifidobacterium breve SC95 [VIBP]
21877
21959
+
Tyr
GTA
[ENA]
¡û
>W2012230055
WBNV01000005
Actinomycetota
Bifidobacterium longum subsp. infantis BIO5478 [WBNV]
77790
77872
+
Tyr
GTA
[ENA]
¡û
>W2110013638
BJIQ01000006
Actinomycetota
Bifidobacteriaceae bacterium MCC01957 [BJIQ]
192942
193024
+
Tyr
GTA
[ENA]
¡û
>W2110013763
BJIT01000003
Actinomycetota
Bifidobacteriaceae bacterium MCC01959 [BJIT]
59898
59816
-
Tyr
GTA
[ENA]
¡û
>W2110014209
BJJB01000014
Actinomycetota
Bifidobacteriaceae bacterium MCC01966 [BJJB]
734
816
+
Tyr
GTA
[ENA]
¡û
>W2110014712
BJJK01000102
Actinomycetota
Bifidobacteriaceae bacterium MCC02036 [BJJK]
4221
4139
-
Tyr
GTA
[ENA]
¡û
>W2110367363
JADPEI010000015
Actinomycetota
Bifidobacterium breve BSD2780061687_150420_F12 [JADPEI]
10903
10821
-
Tyr
GTA
[ENA]
¡û
>C211168152
CP062937
Actinomycetota
Bifidobacterium longum subsp. infantis KCTC 5934 [CP062937]
741524
741442
-
Tyr
GTA
-
¡û
>C231070524
CP054519
Actinomycetota
Bifidobacterium longum subsp. infantis PI_010 [CP054519]
811361
811279
-
Tyr
GTA
-
¡û
>C231070557
CP054520
Actinomycetota
Bifidobacterium longum subsp. infantis PI_009 [CP054520]
2519518
2519436
-
Tyr
GTA
-
¡û
>C231070598
CP054521
Actinomycetota
Bifidobacterium longum subsp. infantis PI_008 [CP054521]
1562962
1563044
+
Tyr
GTA
-
¡û
>C231070663
CP054522
Actinomycetota
Bifidobacterium longum subsp. infantis PI_007 [CP054522]
2519533
2519451
-
Tyr
GTA
-
¡û
>C231070730
CP054523
Actinomycetota
Bifidobacterium longum subsp. infantis PI_005 [CP054523]
1290995
1290913
-
Tyr
GTA
-
¡û
>C231070769
CP054524
Actinomycetota
Bifidobacterium longum subsp. infantis PI_004 [CP054524]
2519506
2519424
-
Tyr
GTA
-
¡û
>C231070815
CP054525
Actinomycetota
Bifidobacterium longum subsp. infantis PI_003 [CP054525]
1932146
1932228
+
Tyr
GTA
-
¡û
>C231070875
CP054526
Actinomycetota
Bifidobacterium longum subsp. infantis PI_002 [CP054526]
2519498
2519416
-
Tyr
GTA
-
¡û
>C231070980
CP054528
Actinomycetota
Bifidobacterium longum subsp. infantis NLS [CP054528]
2513234
2513152
-
Tyr
GTA
-
¡û
>C231071099
CP054596
Actinomycetota
Bifidobacterium longum subsp. infantis PI_006 [CP054596]
2130883
2130965
+
Tyr
GTA
-
¡û
>C231325165
CP092888
Actinomycetota
Bifidobacterium sp. FKU [CP092888]
1332677
1332595
-
Tyr
GTA
-
¡û
>C231555475
CP114053
Actinomycetota
Bifidobacterium longum subsp. infantis Y46 [CP114053]
1257876
1257794
-
Tyr
GTA
-
¡û
>C231607640
CP118083
Actinomycetota
Bifidobacterium breve VSI11 [CP118083]
1585267
1585185
-
Tyr
GTA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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