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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211415 (21 seq.)
>W1711384963
MEDO01000017
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
35476
35392
-
Leu
GAG
[ENA]
¡û
>W1711424101
MIDT01000081
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
5255
5171
-
Leu
GAG
[ENA]
¡û
>WENV180039700
LLBY010130805
[LLBY] soil metagenome; soil from tomato rhizosphere
303
219
-
Leu
GAG
[ENA]
¡û
>W141094198
AVCH01000021
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
6633
6717
+
Leu
GAG
[ENA]
¡û
>W141094323
AVCK01000001
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
40962
41046
+
Leu
GAG
[ENA]
¡û
>WENV170018656
BBPD01000268
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10407
10491
+
Leu
GAG
[ENA]
¡û
>WENV170019732
BBPE01000345
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
15116
15032
-
Leu
GAG
[ENA]
¡û
>WENV170713974
LNFM01048943
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2271
2187
-
Leu
GAG
[ENA]
¡û
>W1810762595
QQAH01000001
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
277781
277697
-
Leu
GAG
[ENA]
¡û
>W1810785111
QRBE01000010
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
109842
109758
-
Leu
GAG
[ENA]
¡û
>W1810858419
QTJR01000001
Gammaproteobacteria
Lysobacter soli KCTC 22011 [QTJR]
342398
342314
-
Leu
GAG
[ENA]
¡û
>W1810860378
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
1536007
1535923
-
Leu
GAG
[ENA]
¡û
>W2011632567
SMDR01000001
Gammaproteobacteria
Arenimonas sp. R29 [SMDR]
187097
187181
+
Leu
GAG
[ENA]
¡û
>W2012084333
VLNU01000001
Gammaproteobacteria
Lysobacter panacisoli JCM 19212 [VLNU]
2892270
2892354
+
Leu
GAG
[ENA]
¡û
>W2012084371
VLNV01000001
Gammaproteobacteria
Lysobacter sp. SYSU H10001 [VLNV]
137111
137195
+
Leu
GAG
[ENA]
¡û
>W2110445447
JAERQY020000001
Gammaproteobacteria
Lysobacter sp. MMG2 [JAERQY]
398794
398710
-
Leu
GAG
[ENA]
¡û
>C211292417
CP071517
Gammaproteobacteria
Lysobacter arenosi R7 [CP071517]
652127
652211
+
Leu
GAG
-
¡û
>C231266540
CP089925
Gammaproteobacteria
Lysobacter sp. KIS68-7 [CP089925]
2199564
2199648
+
Leu
GAG
-
¡û
>C231294154
CP091317
Gammaproteobacteria
Lysobacter soli RCu6 [CP091317]
3206131
3206047
-
Leu
GAG
-
¡û
>C231332345
CP093341
Gammaproteobacteria
Lysobacter sp. S4-A87 [CP093341]
884023
883939
-
Leu
GAG
-
¡û
>C241111564
CP046603
Gammaproteobacteria
Lysobacter soli XL170 [CP046603]
1553333
1553417
+
Leu
GAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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