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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211424 (54 seq.)
>W1711092542
LTEE01000049
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
144197
144121
-
Leu
CAA
[ENA]
¡û
>W1711093841
LTFJ01000008
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
151794
151718
-
Leu
CAA
[ENA]
¡û
>W1711096256
LTHP01000047
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
42105
42181
+
Leu
CAA
[ENA]
¡û
>W1711096316
LTHQ01000032
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
48769
48845
+
Leu
CAA
[ENA]
¡û
>W1711097578
LTIU01000051
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
6888
6964
+
Leu
CAA
[ENA]
¡û
>W1711098019
LTJF01000009
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
17952
17876
-
Leu
CAA
[ENA]
¡û
>W1711098544
LTJR01000003
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
52436
52512
+
Leu
CAA
[ENA]
¡û
>W1711099076
LTKD01000041
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
6896
6972
+
Leu
CAA
[ENA]
¡û
>W1711099331
LTKK01000015
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
48797
48873
+
Leu
CAA
[ENA]
¡û
>W1711102246
LTNP01000002
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
48401
48477
+
Leu
CAA
[ENA]
¡û
>W1711102336
LTNQ01000035
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
50209
50133
-
Leu
CAA
[ENA]
¡û
>W1711102398
LTNR01000079
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
13024
12948
-
Leu
CAA
[ENA]
¡û
>W1711102446
LTNS01000051
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
48752
48828
+
Leu
CAA
[ENA]
¡û
>W1711102465
LTNT01000009
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
48781
48857
+
Leu
CAA
[ENA]
¡û
>W1711102512
LTNU01000012
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
42002
42078
+
Leu
CAA
[ENA]
¡û
>W1711102600
LTNV01000063
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
56277
56353
+
Leu
CAA
[ENA]
¡û
>W1711103263
LTOO01000007
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
76875
76799
-
Leu
CAA
[ENA]
¡û
>W1711103436
LTOS01000019
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
194
118
-
Leu
CAA
[ENA]
¡û
>W1711107010
LTSJ01000025
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
48299
48375
+
Leu
CAA
[ENA]
¡û
>W1711110036
LTVE01000003
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
6900
6976
+
Leu
CAA
[ENA]
¡û
>W1711113406
LTYH01000002
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
522983
522907
-
Leu
CAA
[ENA]
¡û
>W1711114836
LTZQ01000013
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
52377
52453
+
Leu
CAA
[ENA]
¡û
>W1711114917
LTZS01000005
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
153092
153168
+
Leu
CAA
[ENA]
¡û
>W1711187880
LWPW01000031
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
3382
3458
+
Leu
CAA
[ENA]
¡û
>W1711427627
MIFV01000041
Actinomycetota
Corynebacterium amycolatum [MIFV]
28120
28044
-
Leu
CAA
[ENA]
¡û
>W1711507508
MKXS01000014
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
48882
48958
+
Leu
CAA
[ENA]
¡û
>W1711724003
MTPT01000005
Actinomycetota
Corynebacterium amycolatum [MTPT]
41528
41604
+
Leu
CAA
[ENA]
¡û
>WENV180554226
OCJN01000012
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
142987
142913
-
Leu
CAA
[ENA]
¢þ
>WENV180914501
ODSX01002437
[ODSX] human metagenome; G_DNA_Anterior nares
81
155
+
Leu
CAA
[ENA]
¢þ
>WENV181326393
OFLL01000256
[OFLL] metagenome; faeces
1811
1737
-
Leu
CAA
[ENA]
¢þ
>WENV182629113
OJKR01005808
[OJKR] metagenome; surface
536
610
+
Leu
CAA
[ENA]
¢þ
>WENV182643754
OJLW01000971
[OJLW] metagenome; surface
5258
5184
-
Leu
CAA
[ENA]
¢þ
>WENV182644585
OJLY01000025
[OJLY] metagenome; surface
6033
6107
+
Leu
CAA
[ENA]
¢þ
>WENV182837606
OKGJ01001107
[OKGJ] human gut metagenome; human gut
1614
1540
-
Leu
CAA
[ENA]
¢þ
>WENV170685325
LFRM01084650
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
463
387
-
Leu
CAA
[ENA]
¢þ
>WENV170685874
LFRM01113483
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1403
1479
+
Leu
CAA
[ENA]
¢þ
>WENV170690756
LFRM01359694
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
508
432
-
Leu
CAA
[ENA]
¢þ
>C181056534
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
815519
815593
+
Leu
CAA
-
¡û
>C191094626
CP032788
Actinomycetota
Corynebacterium xerosis GS 1 [CP032788]
392302
392227
-
Leu
CAA
-
¡û
>W09114633
ABZU01000004
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
12162
12238
+
Leu
CAA
[ENA]
¡û
>W1911596499
PNHF01000005
Actinomycetota
Corynebacterium xerosis UMB0908 [PNHF]
57177
57102
-
Leu
CAA
[ENA]
¡û
>W1810187589
PKHS01000001
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
429617
429543
-
Leu
CAA
[ENA]
¡û
>W1810187655
PKHT01000005
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
156565
156491
-
Leu
CAA
[ENA]
¡û
>C151013240
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
1638081
1638157
+
Leu
CAA
-
¡û
>C151034734
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
1152040
1151964
-
Leu
CAA
[Ensembl]
¡û
>C151039845
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
244442
244518
+
Leu
CAA
[Ensembl]
¡û
>W1511457819
JVIP01000041
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
48816
48892
+
Leu
CAA
[ENA]
¡û
>W1511461091
JVMD01000031
Actinomycetota
Corynebacterium halotolerans 307_CHAL [JVMD]
58408
58484
+
Leu
CAA
[ENA]
¡û
>W1511464315
JVPT01000051
Actinomycetota
Corynebacterium sp. 212_CJEI 212_CJEI [JVPT]
48357
48433
+
Leu
CAA
[ENA]
¡û
>W1511469446
JVVM01000001
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
50368
50292
-
Leu
CAA
[ENA]
¡û
>W1511476417
JWEP01000027
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
116
40
-
Leu
CAA
[ENA]
¡û
>W1511585637
LAYS01000055
Actinomycetota
Corynebacterium xerosis ATCC 373 [LAYS]
33249
33173
-
Leu
CAA
[ENA]
¡û
>W1610068183
BCRD01000001
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
624406
624330
-
Leu
CAA
[ENA]
¡û
>W1710065556
BCRD01000001
Actinomycetota
Corynebacterium xerosis NBRC 16721 [BCRD]
624406
624330
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK