This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211438 (65 seq.)
>W131178099
ARLH01000088
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
51785
51709
-
Met
CAT
[ENA]
¡û
>C171072944
CP018101
Betaproteobacteria
Delftia sp. HK171 [CP018101]
1720896
1720820
-
Met
CAT
-
¡û
>C171103240
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
1268275
1268351
+
Met
CAT
-
¡û
>WENV181166374
OEIU01000160
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
61289
61365
+
Met
CAT
[ENA]
¡û
>WENV181411460
OGCI01026370
[OGCI] hot springs metagenome; Hot spring water
126
202
+
Met
CAT
[ENA]
¡û
>WENV181414125
OGCL01000034
[OGCL] hot springs metagenome; Hot spring water
135216
135292
+
Met
CAT
[ENA]
¡û
>WENV181415889
OGCL01033250
[OGCL] hot springs metagenome; Hot spring water
1448
1372
-
Met
CAT
[ENA]
¡û
>C08004070
CP000884
Betaproteobacteria
Delftia acidovorans SPH-1 [CP000884]
1716400
1716327
-
Met
CAT
[Ensembl]
¡û
>WENV170019895
BBPE01001231
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4111
4187
+
Met
CAT
[ENA]
¡û
>WENV170551561
CXWJ01012230
[CXWJ] wastewater metagenome; activated sludge
1633
1709
+
Met
CAT
[ENA]
¡û
>WENV170646218
JQGG01045357
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
227
151
-
Met
CAT
[ENA]
¡û
>WENV170651288
JRYF01005385
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
4849
4925
+
Met
CAT
[ENA]
¡û
>WENV170651452
JRYF01019061
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
674
598
-
Met
CAT
[ENA]
¡û
>WENV170653592
JRYJ01010281
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
936
1012
+
Met
CAT
[ENA]
¡û
>WENV170961726
MLJW01000698
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
4154
4078
-
Met
CAT
[ENA]
¡û
>W1911701417
QNUI01000003
Betaproteobacteria
Comamonadaceae bacterium YIM 73032 [QNUI]
65216
65140
-
Met
CAT
[ENA]
¡û
>W1911702190
QOAZ01000032
Betaproteobacteria
Comamonadaceae bacterium SYSU G00088 [QOAZ]
1414
1490
+
Met
CAT
[ENA]
¡û
>W1810273285
PSNX01000012
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
52364
52288
-
Met
CAT
[ENA]
¡û
>W1810666649
QJOU01000014
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
117465
117541
+
Met
CAT
[ENA]
¡û
>W2010733589
JACIVI010000003
Betaproteobacteria
Piscinibacter sp. SJAQ100 [JACIVI]
130485
130409
-
Met
CAT
[ENA]
¡û
>W2011277957
QNUI01000003
Betaproteobacteria
Comamonadaceae bacterium YIM 73032 [QNUI]
65216
65140
-
Met
CAT
[ENA]
¡û
>W2011278805
QOAZ01000032
Betaproteobacteria
Comamonadaceae bacterium SYSU G00088 [QOAZ]
1414
1490
+
Met
CAT
[ENA]
¡û
>W2011306188
QUSW01000005
Betaproteobacteria
Rhizobacter sp. S-16 [QUSW]
367574
367498
-
Met
CAT
[ENA]
¡û
>W2011397761
RCHJ01000014
Betaproteobacteria
Piscinibacter defluvii SH-1 [RCHJ]
114713
114637
-
Met
CAT
[ENA]
¡û
>W2011522478
SACT01000002
Betaproteobacteria
Rubrivivax sp. ICH-3 [SACT]
96704
96628
-
Met
CAT
[ENA]
¡û
>W2011627302
SMAH01000011
Betaproteobacteria
Tepidimonas ignava DSM 12034 [SMAH]
7218
7142
-
Met
CAT
[ENA]
¡û
>W2012037188
VIDQ01000001
Betaproteobacteria
Azohydromonas sp. 13393 [VIDQ]
167815
167739
-
Met
CAT
[ENA]
¡û
>W2012062106
VJNA01000008
Betaproteobacteria
Tepidimonas aquatica CLN-1 [VJNA]
104952
105028
+
Met
CAT
[ENA]
¡û
>W2012062223
VJNC01000006
Betaproteobacteria
Tepidimonas ignava SPS-1037 [VJNC]
7250
7174
-
Met
CAT
[ENA]
¡û
>W2012062250
VJND01000002
Betaproteobacteria
Tepidimonas sediminis YIM 72259 [VJND]
249880
249804
-
Met
CAT
[ENA]
¡û
>W2012062872
VJON01000038
Betaproteobacteria
Tepidimonas sp. SPSP-6 [VJON]
7920
7844
-
Met
CAT
[ENA]
¡û
>W2110445560
JAERRA010000002
Betaproteobacteria
Piscinibacter sp. Jin2 [JAERRA]
556846
556922
+
Met
CAT
[ENA]
¡û
>W2110566460
JAGQDD010000015
Betaproteobacteria
Ideonella sp. 3Y2 [JAGQDD]
41891
41967
+
Met
CAT
[ENA]
¡û
>W2110566567
JAGQDF010000007
Betaproteobacteria
Ideonella sp. 4Y16 [JAGQDF]
180574
180650
+
Met
CAT
[ENA]
¡û
>C201095483
CP041352
Betaproteobacteria
Casimicrobium huifangae SJ-1 [CP041352]
4343236
4343160
-
Met
CAT
-
¡û
>W10105780
ACXV01000003
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
126630
126706
+
Met
CAT
[ENA]
¡û
>C211120569
CP059256
Betaproteobacteria
Burkholderiaceae bacterium [CP059256]
772395
772471
+
Met
CAT
-
¡û
>W1510021345
BBYR01000017
Betaproteobacteria
Piscinibacter sakaiensis 201-F6 [BBYR]
69534
69458
-
Met
CAT
[ENA]
¡û
>C231019586
AP025730
Betaproteobacteria
Sphaerotilus sp. FB-5 [AP025730]
1436627
1436551
-
Met
CAT
-
¡û
>C231381456
CP097266
Betaproteobacteria
Acidovorax sp. NCPPB 3859 [CP097266]
879823
879899
+
Met
CAT
-
¡û
>C231381536
CP097267
Betaproteobacteria
Acidovorax sp. NCPPB 3576 [CP097267]
4338735
4338659
-
Met
CAT
-
¡û
>C231529490
CP110257
Betaproteobacteria
Schlegelella aquatica LMG 23380 [CP110257]
547991
547915
-
Met
CAT
-
¡û
>C231533212
CP110415
Betaproteobacteria
Caldimonas thermodepolymerans LMG 21645 [CP110415]
840268
840192
-
Met
CAT
-
¡û
>C231557244
CP114201
Betaproteobacteria
Delftia acidovorans BIM B-1761 [CP114201]
5576879
5576955
+
Met
CAT
-
¡û
>C231572304
CP116009
Betaproteobacteria
Ramlibacter tataouinensis DMF-7 [CP116009]
1991010
1991086
+
Met
CAT
-
¡û
>C231634743
CP120956
Betaproteobacteria
Delftia tsuruhatensis Ery-6A [CP120956]
1276522
1276446
-
Met
CAT
-
¡û
>C241122318
CP047650
Betaproteobacteria
Xylophilus rhododendri KACC 21265 [CP047650]
2353460
2353536
+
Met
CAT
-
¡û
>C241276481
CP127362
Betaproteobacteria
Paracidovorax citrulli KACC 17913 [CP127362]
934967
935043
+
Met
CAT
-
¡û
>C241276556
CP127363
Betaproteobacteria
Paracidovorax citrulli KACC 17005 [CP127363]
4417284
4417208
-
Met
CAT
-
¡û
>W11108100
ACXV01000003
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
126630
126706
+
Met
CAT
[ENA]
¡û
>W1510741276
CYHF01000003
Betaproteobacteria
Thiomonas bhubaneswarensis DSM 18181 [CYHF]
195302
195226
-
Met
CAT
[ENA]
¡û
>C121016380
FP475956
Betaproteobacteria
Thiomonas arsenitoxydans 3As [FP475956]
340753
340677
-
Met
CAT
[Ensembl]
¡û
>W1610074125
BCWK01000006
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
46994
46918
-
Met
CAT
[ENA]
¡û
>W1610085382
CTRI01000003
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
119475
119551
+
Met
CAT
[ENA]
¡û
>W1610085425
CTRJ01000007
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
183696
183772
+
Met
CAT
[ENA]
¡û
>W1610085483
CTRK01000045
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
66517
66441
-
Met
CAT
[ENA]
¡û
>W1610085524
CTRL01000045
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
101340
101264
-
Met
CAT
[ENA]
¡û
>W1610085567
CTRM01000030
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
5843
5767
-
Met
CAT
[ENA]
¡û
>W1610632417
LIPV01000003
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
195302
195226
-
Met
CAT
[ENA]
¡û
>W1710071243
BCWK01000006
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
46994
46918
-
Met
CAT
[ENA]
¡û
>W1710089971
CTRI01000003
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
119475
119551
+
Met
CAT
[ENA]
¡û
>W1710090014
CTRJ01000007
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
183696
183772
+
Met
CAT
[ENA]
¡û
>W1710090072
CTRK01000045
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
66517
66441
-
Met
CAT
[ENA]
¡û
>W1710090113
CTRL01000045
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
101340
101264
-
Met
CAT
[ENA]
¡û
>W1710090156
CTRM01000030
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
5843
5767
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK