This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21180 (52 seq.)
>W1711621588
MPDG02000001
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
1731402
1731312
-
Ser
TGA
[ENA]
¡û
>w024935
AAZC01000093
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
6599
6512
-
Ser
TGA
[ENA]
¡û
>w018688
AATK01000133
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
2636
2728
+
Ser
TGA
[ENA]
¡û
>WENV180310936
OBJT01060573
[OBJT] soil metagenome; soil
205
115
-
Ser
TGA
[ENA]
¢þ
>W141171190
AXZL01000045
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
9863
9953
+
Ser
TGA
[ENA]
¡û
>W141171191
AXZL01000045
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
10592
10682
+
Ser
TGA
[ENA]
¡û
>C08008683
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3107616
3107529
-
Ser
TGA
[Ensembl]
¡û
>W141277679
JAEU01000002
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
9623
9712
+
Ser
TGA
[ENA]
¡û
>W141277681
JAEU01000003
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
2597
2687
+
Ser
TGA
[ENA]
¡û
>W141277682
JAEU01000003
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
3345
3435
+
Ser
TGA
[ENA]
¡û
>W141277689
JAEU01000006
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
370608
370698
+
Ser
TGA
[ENA]
¡û
>C181016871
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
3500029
3499939
-
Ser
TGA
-
¡û
>C181016872
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
3497382
3497292
-
Ser
TGA
-
¡û
>C181016873
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
3496901
3496811
-
Ser
TGA
-
¡û
>C181016879
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
3026449
3026359
-
Ser
TGA
-
¡û
>C181165378
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
416595
416685
+
Ser
TGA
-
¡û
>C181165462
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
814063
813973
-
Ser
TGA
-
¡û
>C191017580
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
1452214
1452304
+
Ser
TGA
-
¡û
>C191017581
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
1452703
1452793
+
Ser
TGA
-
¡û
>W141520048
JGVI01000040
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
13959
14049
+
Ser
TGA
[ENA]
¡û
>W141520049
JGVI01000040
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
14524
14614
+
Ser
TGA
[ENA]
¡û
>W141520067
JGVI01000059
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
169328
169418
+
Ser
TGA
[ENA]
¡û
>W09104089
AALH01000082
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
6780
6690
-
Ser
TGA
[ENA]
¡û
>W09104095
AALH01000102
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
818
908
+
Ser
TGA
[ENA]
¡û
>W09104096
AALH01000102
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
1579
1669
+
Ser
TGA
[ENA]
¡û
>C191206434
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
2043125
2043215
+
Ser
TGA
-
¡û
>C09109169
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
2093977
2094067
+
Ser
TGA
[Ensembl]
¡û
>W1810533072
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
1300906
1300816
-
Ser
TGA
[ENA]
¡û
>W1810587734
QFLG01000015
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
62133
62043
-
Ser
TGA
[ENA]
¡û
>W1810587745
QFLG01000026
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
69229
69319
+
Ser
TGA
[ENA]
¡û
>W1810587746
QFLG01000026
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
69793
69883
+
Ser
TGA
[ENA]
¡û
>WENV030879
AACY021318999
Marine microbial communities from Global Ocean Sampling (GOS)
723
813
+
Gln
TTG
[ENA]
>W10119076
ADVH01000035
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
47771
47681
-
Ser
TGA
[ENA]
¡û
>W10126384
AEDE01000002
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
537169
537079
-
Ser
TGA
[ENA]
¡û
>C11119402
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
2098951
2099041
+
Ser
TGA
[Ensembl]
¡û
>C11119641
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3130945
3130855
-
Ser
TGA
[Ensembl]
¡û
>C11121513
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
1880903
1880993
+
Ser
TGA
[Ensembl]
¡û
>C11121514
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
1881338
1881428
+
Ser
TGA
[Ensembl]
¡û
>C11121521
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
2290145
2290235
+
Ser
TGA
[Ensembl]
¡û
>W11125248
ADVH01000035
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
47771
47681
-
Ser
TGA
[ENA]
¡û
>W11133645
AEDE01000002
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
537169
537079
-
Ser
TGA
[ENA]
¡û
>W11169890
AFOZ01000019
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
131486
131576
+
Ser
TGA
[ENA]
¡û
>W11169894
AFOZ01000022
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
15800
15710
-
Ser
TGA
[ENA]
¡û
>W11169910
AFOZ01000029
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
11339
11249
-
Ser
TGA
[ENA]
¡û
>W11178453
AGEX01000006
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
77611
77701
+
Ser
TGA
[ENA]
¡û
>W1610617837
LGYY01000097
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
11582
11492
-
Ser
TGA
[ENA]
¡û
>W1610617880
LGYY01000203
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
10319
10409
+
Ser
TGA
[ENA]
¡û
>W1610617881
LGYY01000203
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
10883
10973
+
Ser
TGA
[ENA]
¡û
>W1710597962
FTNN01000019
Gammaproteobacteria
Shewanella morhuae [FTNN]
18862
18952
+
Ser
TGA
[ENA]
¡û
>W1710744012
LGYY01000097
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
11582
11492
-
Ser
TGA
[ENA]
¡û
>W1710744055
LGYY01000203
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
10319
10409
+
Ser
TGA
[ENA]
¡û
>W1710744056
LGYY01000203
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
10883
10973
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK