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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211957 (57 seq.)
>W1711073905
LSJA01000371
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
3660
3584
-
Ile
GAT
[ENA]
¡û
>W131111835
APMP01000051
Alphaproteobacteria
Caulobacter vibrioides OR37 [APMP]
2002
2078
+
Ile
GAT
[ENA]
¡û
>C005356
AE005673
Alphaproteobacteria
Caulobacter vibrioides CB15 [AE005673]
3770012
3769936
-
Ile
GAT
[Ensembl]
¡û
>C005361
AE005673
Alphaproteobacteria
Caulobacter vibrioides CB15 [AE005673]
2839981
2839905
-
Ile
GAT
[Ensembl]
¡û
>WENV180024800
FTIJ01033732
[FTIJ] metagenome; soil
221
297
+
Ile
GAT
[ENA]
¡û
>WENV180025824
FTIQ01211742
[FTIQ] metagenome; soil
130
206
+
Ile
GAT
[ENA]
¡û
>WENV180027149
FTIW01379267
[FTIW] metagenome; soil
229
153
-
Ile
GAT
[ENA]
¡û
>WENV180027910
FTIZ01248736
[FTIZ] metagenome; soil
741
665
-
Ile
GAT
[ENA]
¡û
>WENV180028668
FTJE01657070
[FTJE] metagenome; soil
28
104
+
Ile
GAT
[ENA]
¡û
>WENV180028676
FTJE01743161
[FTJE] metagenome; soil
127
51
-
Ile
GAT
[ENA]
¡û
>WENV180035225
FTKT01013012
[FTKT] metagenome; soil
3756
3680
-
Ile
GAT
[ENA]
¡û
>WENV181192165
OEPS010442477
[OEPS] soil metagenome; soil
288
212
-
Ile
GAT
[ENA]
¡û
>WENV181227834
OFDN01053796
[OFDN] hot springs metagenome; Water
829
753
-
Ile
GAT
[ENA]
¡û
>W141136750
AWGC01000064
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
76
1
-
Ile
GAT
[ENA]
¡û
>W141136797
AWGD01000064
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
791
715
-
Ile
GAT
[ENA]
¡û
>W141136799
AWGD01000065
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
791
715
-
Ile
GAT
[ENA]
¡û
>W141136890
AWGF01000025
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
60
136
+
Ile
GAT
[ENA]
¡û
>W141136892
AWGF01000040
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
49
125
+
Ile
GAT
[ENA]
¡û
>WENV183697276
OUNJ010244662
[OUNJ] metagenome; soil
1194
1118
-
Ile
GAT
[ENA]
¡û
>WENV183743621
PJUJ01011437
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
389
465
+
Ile
GAT
[ENA]
¡û
>WENV183744326
PJUK01008082
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
389
465
+
Ile
GAT
[ENA]
¡û
>WENV170379684
CETV01183476
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
211
287
+
Ile
GAT
[ENA]
¡û
>WENV170595560
FUFK011850196
[FUFK] metagenome; unknown
170
94
-
Ile
GAT
[ENA]
¡û
>C181078843
CP023313
Alphaproteobacteria
Caulobacter vibrioides CB2 [CP023313]
3836343
3836267
-
Ile
GAT
-
¡û
>C181078848
CP023313
Alphaproteobacteria
Caulobacter vibrioides CB2 [CP023313]
2973026
2972950
-
Ile
GAT
-
¡û
>C181078894
CP023314
Alphaproteobacteria
Caulobacter vibrioides CB1 [CP023314]
3890350
3890274
-
Ile
GAT
-
¡û
>C181078899
CP023314
Alphaproteobacteria
Caulobacter vibrioides CB1 [CP023314]
2960095
2960019
-
Ile
GAT
-
¡û
>C181078948
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
3898626
3898550
-
Ile
GAT
-
¡û
>C181078953
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
2868577
2868501
-
Ile
GAT
-
¡û
>C181160446
CP027850
Alphaproteobacteria
Caulobacter segnis TK0059 [CP027850]
181847
181923
+
Ile
GAT
-
¡û
>C181160453
CP027850
Alphaproteobacteria
Caulobacter segnis TK0059 [CP027850]
1154130
1154206
+
Ile
GAT
-
¡û
>C191114266
CP033875
Alphaproteobacteria
Caulobacter sp. FWC26 [CP033875]
169623
169699
+
Ile
GAT
-
¡û
>C191114273
CP033875
Alphaproteobacteria
Caulobacter sp. FWC26 [CP033875]
1278850
1278926
+
Ile
GAT
-
¡û
>C09103140
CP001340
Alphaproteobacteria
Caulobacter vibrioides NA1000 [CP001340]
3795994
3795918
-
Ile
GAT
[Ensembl]
¡û
>C09103145
CP001340
Alphaproteobacteria
Caulobacter vibrioides NA1000 [CP001340]
2865961
2865885
-
Ile
GAT
[Ensembl]
¡û
>W1810069369
PEBG01000001
Alphaproteobacteria
Caulobacter sp. FWC26 [PEBG]
4146620
4146544
-
Ile
GAT
[ENA]
¡û
>W1810069388
PEBG01000001
Alphaproteobacteria
Caulobacter sp. FWC26 [PEBG]
730210
730134
-
Ile
GAT
[ENA]
¡û
>W1810177665
PJRR01000023
Alphaproteobacteria
Caulobacter vibrioides DSM 9893 [PJRR]
1987
2063
+
Ile
GAT
[ENA]
¡û
>W1810503526
QBKE01000011
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
3505
3429
-
Ile
GAT
[ENA]
¡û
>W2010435366
JAAALA010000008
Alphaproteobacteria
Caulobacter sp. SLTY [JAAALA]
25317
25241
-
Ile
GAT
[ENA]
¡û
>W2010435369
JAAALA010000008
Alphaproteobacteria
Caulobacter sp. SLTY [JAAALA]
18833
18757
-
Ile
GAT
[ENA]
¡û
>W2010560209
JAASQT010000012
Alphaproteobacteria
Brevundimonas terrae DSM 17329 [JAASQT]
2254
2330
+
Ile
GAT
[ENA]
¡û
>W2011539367
SCNR01000104
Alphaproteobacteria
Caulobacter sp. 3R27C2-B [SCNR]
1956
2032
+
Ile
GAT
[ENA]
¡û
>W2110050019
BMZB01000011
Alphaproteobacteria
Asticcacaulis endophyticus KCTC 32296 [BMZB]
1674
1750
+
Ile
GAT
[ENA]
¡û
>C211371992
CP079926
Alphaproteobacteria
Caulobacter vibrioides CB S2B lysogen [CP079926]
3813149
3813073
-
Ile
GAT
-
¡û
>C211371997
CP079926
Alphaproteobacteria
Caulobacter vibrioides CB S2B lysogen [CP079926]
2882884
2882808
-
Ile
GAT
-
¡û
>W10109918
ADBN01000072
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
206
282
+
Ile
GAT
[ENA]
¡û
>C231201053
CP084911
Alphaproteobacteria
Asticcacaulis sp. AND118 [CP084910, CP084911]
534728
534804
+
Ile
GAT
-
¡û
>C231201060
CP084911
Alphaproteobacteria
Asticcacaulis sp. AND118 [CP084910, CP084911]
255973
255897
-
Ile
GAT
-
¡û
>C231566385
CP115463
Alphaproteobacteria
Caulobacter sp. NIBR1757 [CP115463]
2801478
2801402
-
Ile
GAT
-
¡û
>C231566388
CP115463
Alphaproteobacteria
Caulobacter sp. NIBR1757 [CP115463]
2793927
2793851
-
Ile
GAT
-
¡û
>C241292661
CP130044
Alphaproteobacteria
Asticcacaulis sp. ZE23SCel15 [CP130044]
291325
291249
-
Ile
GAT
-
¡û
>W11112355
ADBN01000072
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
206
282
+
Ile
GAT
[ENA]
¡û
>W11123402
ADUH01000274
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
1742
1818
+
Ile
GAT
[ENA]
¡û
>C121001819
CP002008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [CP002008]
181859
181935
+
Ile
GAT
[Ensembl]
¡û
>C121001826
CP002008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [CP002008]
1154186
1154262
+
Ile
GAT
[Ensembl]
¡û
>W1610913210
LSJA01000371
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
3660
3584
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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