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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.211965 (18 seq.)
>W1710889310
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
64429
64353
-
Asn
GTT
[ENA]
¡û
>W1711767880
MVBC01000008
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
209860
209784
-
Asn
GTT
[ENA]
¡û
>WENV170165545
CEON01177493
[CEON] marine metagenome genome assembly TARA_034_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
230
306
+
Asn
GTT
[ENA]
¡û
>WENV170400349
CEUE01098684
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
31
107
+
Asn
GTT
[ENA]
¡û
>WENV170471361
CEVG01061228
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
351
427
+
Asn
GTT
[ENA]
¡û
>C191087863
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
2790881
2790955
+
Asn
GTT
-
¡û
>SRA1015688
SRR023846.158853
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
2
76
+
Asn
GTT
[SRA]
>C231528159
CP110136
Bacteroidota
Hymenobacter sp. YIM 151858-1 [CP110136]
3002839
3002913
+
Asn
GTT
-
¡û
>C231528213
CP110139
Bacteroidota
Hymenobacter sp. YIM 151500-1 [CP110139]
3873590
3873514
-
Asn
GTT
-
¡û
>C231538766
CP110854
Bacteroidota
Saprospira grandis WH [CP110854]
1309469
1309543
+
Asn
GTT
-
¡û
>C231538767
CP110854
Bacteroidota
Saprospira grandis WH [CP110854]
1309568
1309642
+
Asn
GTT
-
¡û
>C231582838
CP116808
Bacteroidota
Saprospira sp. CCB-QB6 [CP116808]
1255822
1255896
+
Asn
GTT
-
¡û
>C231582839
CP116808
Bacteroidota
Saprospira sp. CCB-QB6 [CP116808]
1255921
1255995
+
Asn
GTT
-
¡û
>C121003021
CP002831
Bacteroidota
Saprospira grandis str. Lewin [CP002831]
1358255
1358331
+
Asn
GTT
[Ensembl]
¡û
>C121003022
CP002831
Bacteroidota
Saprospira grandis str. Lewin [CP002831]
1358354
1358430
+
Asn
GTT
[Ensembl]
¡û
>W121017428
AGRT01000018
Bacteroidota
Saprospira grandis DSM 2844 [AGRT]
138607
138683
+
Asn
GTT
[ENA]
¡û
>W121017429
AGRT01000018
Bacteroidota
Saprospira grandis DSM 2844 [AGRT]
138706
138782
+
Asn
GTT
[ENA]
¡û
>W1610749688
LNAL01000006
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
64429
64353
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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