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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.212017 (12 seq.)
>WENV180042892
LQAG01011910
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
183
259
+
Met
CAT
[ENA]
¡û
>WENV180043603
LQAI01002142
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
740
664
-
Met
CAT
[ENA]
¡û
>WENV170418630
CEUM01056742
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
29966
29890
-
Met
CAT
[ENA]
¡û
>WENV170441896
CEUV01297041
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1017
941
-
Met
CAT
[ENA]
¡û
>WENV170470444
CEVF01274480
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
285
361
+
Met
CAT
[ENA]
¡û
>WENV170896331
MDTD01093894
[MDTD] marine metagenome; seawater
18822
18746
-
Met
CAT
[ENA]
¡û
>C181226972
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
459067
459143
+
Met
CAT
-
¡û
>C231004612
AP024485
Thermodesulfobacteriota
Pseudodesulfovibrio sediminis SF6 [AP024485]
396813
396737
-
Met
CAT
-
¡û
>C231268681
CP090009
Thermodesulfobacteriota
Paradesulfovibrio bizertensis SY-1 [CP090009]
986602
986526
-
Met
CAT
-
¡û
>C241008595
AP026709
Thermodesulfobacteriota
Pseudodesulfovibrio nedwellii SYK [AP026709]
562783
562707
-
Met
CAT
-
¡û
>C131017953
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
458496
458420
-
Met
CAT
[Ensembl]
¡û
>W1710602190
FUYA01000004
Thermodesulfobacteriota
Desulfobaculum bizertense DSM 18034 [FUYA]
119488
119564
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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