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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.212038 (13 seq.)
>WENV180277260
OBHV01149975
[OBHV] metagenome; water
104
28
-
Asp
GTC
[ENA]
¡û
>WENV180583580
OCNB01127107
[OCNB] metagenome; diffuse fluid
38
114
+
Asp
GTC
[ENA]
¡û
>WENV181293799
OFHG01025611
[OFHG] soil metagenome; Clay
799
875
+
Asp
GTC
[ENA]
¡û
>WENV170572464
FLOH01000894
[FLOH] marine metagenome; water
38538
38462
-
Asp
GTC
[ENA]
¡û
>WENV170572466
FLOH01000894
[FLOH] marine metagenome; water
38017
37941
-
Asp
GTC
[ENA]
¡û
>WENV170575643
FPHH01000059
[FPHH] hydrothermal vent metagenome genome assembly, contig: NODE_101.; water
28815
28739
-
Asp
GTC
[ENA]
¡û
>WENV170575646
FPHH01000059
[FPHH] hydrothermal vent metagenome genome assembly, contig: NODE_101.; water
28432
28356
-
Asp
GTC
[ENA]
¡û
>C231194032
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
1646221
1646145
-
Asp
GTC
-
¡û
>C231194035
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
1645381
1645305
-
Asp
GTC
-
¡û
>C241042977
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
725411
725487
+
Asp
GTC
-
¡û
>C241042979
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
725953
726029
+
Asp
GTC
-
¡û
>C11119331
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
781538
781614
+
Asp
GTC
[Ensembl]
¡û
>C11119333
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
781927
782003
+
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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