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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.212837 (34 seq.)
>W1710810319
LKGY01000073
Gammaproteobacteria
Pseudomonas marginalis ICMP 9505 [LKGY]
23305
23229
-
Arg
TCT
[ENA]
¡û
>W1710815689
LKKM01000010
Gammaproteobacteria
Pseudomonas sp. TTU2014-105ASC [LKKM]
38939
39015
+
Arg
TCT
[ENA]
¡û
>WENV170015187
AZIE01009338
[AZIE] marine sediment metagenome; sample MGS-MCh from oil contaminated site at the lagoon of Mar Chica, located in the north-west
787
863
+
Arg
TCT
[ENA]
¡û
>WENV170263129
CERC01019694
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1574
1498
-
Arg
TCT
[ENA]
¡û
>WENV170264210
CERD01014780
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
91838
91762
-
Arg
TCT
[ENA]
¡û
>C191044712
CP026511
Gammaproteobacteria
Pseudomonadaceae bacterium SI-3 [CP026511]
2240217
2240293
+
Arg
TCT
-
¡û
>C191044774
CP026512
Gammaproteobacteria
Candidatus Pseudomonas adelgestsugas [CP026512]
1022805
1022729
-
Arg
TCT
-
¡û
>W1910620169
LKBR01000014
Gammaproteobacteria
Pseudomonas sp. ICMP 460 [LKBR]
23714
23638
-
Arg
TCT
[ENA]
¡û
>W1910743846
MHZN01000098
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPLOWO2_12_59_9 [MHZN]
3252
3176
-
Arg
TCT
[ENA]
¡û
>W1810224453
POUL01000002
Gammaproteobacteria
Stutzerimonas stutzeri 4C29 [POUL]
361535
361459
-
Arg
TCT
[ENA]
¡û
>W1810224581
POUN01000004
Gammaproteobacteria
Stutzerimonas stutzeri KC [POUN]
468959
469035
+
Arg
TCT
[ENA]
¡û
>W1810722111
QNTV01000015
Gammaproteobacteria
Stutzerimonas zhaodongensis SST2 [QNTV]
89019
88943
-
Arg
TCT
[ENA]
¡û
>W2010311416
CABWMS010000005
Gammaproteobacteria
Pseudomonas sp. 9Ag [CABWMS]
1056910
1056834
-
Arg
TCT
[ENA]
¡û
>W2010518548
JAAMRC010000007
Gammaproteobacteria
Pseudomonas stutzeri 99A1 [JAAMRC]
13050
12974
-
Arg
TCT
[ENA]
¡û
>W2010776525
LKBR01000014
Gammaproteobacteria
Pseudomonas sp. ICMP 460 [LKBR]
23714
23638
-
Arg
TCT
[ENA]
¡û
>W2010877278
MHZN01000098
Gammaproteobacteria
Pseudomonadales bacterium RIFCSPLOWO2_12_59_9 [MHZN]
3252
3176
-
Arg
TCT
[ENA]
¡û
>W2011416538
RFFM01000005
Gammaproteobacteria
Pseudomonas zhaodongensis NEAU-ST5-21 [RFFM]
861
785
-
Arg
TCT
[ENA]
¡û
>W2012096864
VNHQ01000011
Gammaproteobacteria
Pseudomonas stutzeri NP_8Ht [VNHQ]
247947
248023
+
Arg
TCT
[ENA]
¡û
>W2012151932
VUAZ01000095
Gammaproteobacteria
Pseudomonas kitaguniensis MAFF 212408 [VUAZ]
11243
11319
+
Arg
TCT
[ENA]
¡û
>W2012151948
VUAZ01000256
Gammaproteobacteria
Pseudomonas kitaguniensis MAFF 212408 [VUAZ]
286
362
+
Arg
TCT
[ENA]
¡û
>W2012151950
VUBA01000001
Gammaproteobacteria
Pseudomonas kitaguniensis MAFF 730085 [VUBA]
126
50
-
Arg
TCT
[ENA]
¡û
>C211074929
CP048411
Gammaproteobacteria
Pseudomonas sp. MTM4 [CP048411]
844021
843945
-
Arg
TCT
-
¡û
>C211348515
CP076683
Gammaproteobacteria
Pseudomonas zhaodongensis A252 [CP076683]
3555624
3555548
-
Arg
TCT
-
¡û
>C211394253
CP082271
Gammaproteobacteria
Pseudomonas sp. DNDY-54 [CP082271]
2401666
2401590
-
Arg
TCT
-
¡û
>C231328252
CP093164
Gammaproteobacteria
[Pseudomonas] zhaodongensis LQ01-5 [CP093164]
2377824
2377900
+
Arg
TCT
-
¡û
>C231367574
CP096208
Gammaproteobacteria
Pseudomonas knackmussii B09-2 [CP096208]
2398277
2398201
-
Arg
TCT
-
¡û
>W2110782135
WIGA01000009
Gammaproteobacteria
Pseudomonas stutzeri KOL14.W.20.3 [WIGA]
244263
244339
+
Arg
TCT
[ENA]
¡û
>W2110782179
WIGB01000002
Gammaproteobacteria
Pseudomonas stutzeri KOL14.W.20.2 [WIGB]
2460460
2460384
-
Arg
TCT
[ENA]
¡û
>W1511489989
JWTL01000001
Gammaproteobacteria
Pseudomonas sp. 10B238 [JWTL]
244165
244241
+
Arg
TCT
[ENA]
¡û
>C161000967
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
2814617
2814541
-
Arg
TCT
-
¡û
>W121017951
AGSL01000030
Gammaproteobacteria
Stutzerimonas stutzeri ATCC 14405 = CCUG 16156 [AGSL]
6092
6168
+
Arg
TCT
[ENA]
¡û
>W1610674374
LKGY01000073
Gammaproteobacteria
Pseudomonas marginalis ICMP 9505 [LKGY]
23305
23229
-
Arg
TCT
[ENA]
¡û
>W1610679786
LKKM01000010
Gammaproteobacteria
Pseudomonas sp. TTU2014-105ASC [LKKM]
38939
39015
+
Arg
TCT
[ENA]
¡û
>W1710586222
FQXA01000002
Gammaproteobacteria
Stutzerimonas xanthomarina DSM 18231 [FQXA]
549019
548943
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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