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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.212993 (136 seq.)
>W131009761
AHXY01000012
Bacillota
Enterococcus faecium E2966 [AHXY]
90872
90947
+
Met
CAT
[ENA]
¡û
>W131018062
AITR01000019
Bacillota
Enterococcus faecium HF50104 [AITR]
76911
76986
+
Met
CAT
[ENA]
¡û
>W131018550
AIUA01000007
Bacillota
Enterococcus faecium HM1074 [AIUA]
132087
132162
+
Met
CAT
[ENA]
¡û
>W1710901876
LNLH01000003
Bacillota
Enterococcus faecium [LNLH]
3336
3411
+
Met
CAT
[ENA]
¡û
>W131026663
AIZU01000020
Bacillota
Enterococcus faecium UAA952 [AIZU]
1374
1299
-
Met
CAT
[ENA]
¡û
>W131031417
AJDG01000001
Bacillota
Enterococcus faecium UAA407 [AJDG]
315836
315911
+
Met
CAT
[ENA]
¡û
>W1710945667
LORO01000005
Bacillota
Enterococcus faecium [LORO]
559768
559843
+
Met
CAT
[ENA]
¡û
>W131031946
AJDP01000033
Bacillota
Enterococcus faecium UAA950 [AJDP]
238911
238836
-
Met
CAT
[ENA]
¡û
>W1711023981
LRAS01000237
Bacillota
Enterococcus faecium [LRAS]
296
371
+
Met
CAT
[ENA]
¡û
>W1711024011
LRAT01000090
Bacillota
Enterococcus faecium [LRAT]
63
138
+
Met
CAT
[ENA]
¡û
>W1711024012
LRAT01000091
Bacillota
Enterococcus faecium [LRAT]
2389
2314
-
Met
CAT
[ENA]
¡û
>W1711024040
LRAT01000193
Bacillota
Enterococcus faecium [LRAT]
299
374
+
Met
CAT
[ENA]
¡û
>W1711024090
LRAU01000090
Bacillota
Enterococcus faecium [LRAU]
1682
1607
-
Met
CAT
[ENA]
¡û
>W1711024098
LRAU01000193
Bacillota
Enterococcus faecium [LRAU]
2389
2314
-
Met
CAT
[ENA]
¡û
>W1711024099
LRAU01000194
Bacillota
Enterococcus faecium [LRAU]
35536
35461
-
Met
CAT
[ENA]
¡û
>W1711024157
LRAV01000118
Bacillota
Enterococcus faecium [LRAV]
296
371
+
Met
CAT
[ENA]
¡û
>W1711024276
LRAX01000127
Bacillota
Enterococcus faecium [LRAX]
2204
2129
-
Met
CAT
[ENA]
¡û
>W1711024416
LRBA01000052
Bacillota
Enterococcus faecium [LRBA]
299
374
+
Met
CAT
[ENA]
¡û
>W1711024439
LRBA01000093
Bacillota
Enterococcus faecium [LRBA]
296
371
+
Met
CAT
[ENA]
¡û
>W1711024441
LRBA01000095
Bacillota
Enterococcus faecium [LRBA]
63
138
+
Met
CAT
[ENA]
¡û
>W1711024647
LRBD01000138
Bacillota
Enterococcus faecium [LRBD]
296
371
+
Met
CAT
[ENA]
¡û
>W1711024651
LRBE01000009
Bacillota
Enterococcus faecium [LRBE]
299
374
+
Met
CAT
[ENA]
¡û
>W1711024699
LRBE01000140
Bacillota
Enterococcus faecium [LRBE]
296
371
+
Met
CAT
[ENA]
¡û
>W1711024700
LRBE01000149
Bacillota
Enterococcus faecium [LRBE]
63
138
+
Met
CAT
[ENA]
¡û
>W1711032711
LRHK01000001
Bacillota
Enterococcus faecium [LRHK]
1953114
1953189
+
Met
CAT
[ENA]
¡û
>W1711108269
LTTP01000003
Bacillota
Enterococcus sp. HMSC065H03 [LTTP]
636
711
+
Met
CAT
[ENA]
¡û
>W1711108282
LTTP01000057
Bacillota
Enterococcus sp. HMSC065H03 [LTTP]
1686
1761
+
Met
CAT
[ENA]
¡û
>W131202403
ASWS01000005
Bacillota
Enterococcus faecium EnGen0377 [ASWS]
1168229
1168154
-
Met
CAT
[ENA]
¡û
>W131209575
ATIX01000058
Bacillota
Enterococcus faecium LA4B-2 [ATIX]
662
737
+
Met
CAT
[ENA]
¡û
>W1711459397
MJDO01000013
Bacillota
Enterococcus hirae [MJDO]
425283
425208
-
Met
CAT
[ENA]
¡û
>W1711694142
MSHV01000139
Bacillota
Enterococcus faecium [MSHV]
12343
12268
-
Met
CAT
[ENA]
¡û
>W1711694397
MSIA01000108
Bacillota
Enterococcus faecium [MSIA]
1046
971
-
Met
CAT
[ENA]
¡û
>W1711957731
NBVO01000072
Bacillota
Enterococcus faecium [NBVO]
1131
1204
+
Met
CAT
[ENA]
¡û
>W1712067578
NGLB01000001
Bacillota
Enterococcus faecium [NGLB]
2121048
2120973
-
Met
CAT
[ENA]
¡û
>W1712067580
NGLB01000001
Bacillota
Enterococcus faecium [NGLB]
2009511
2009436
-
Met
CAT
[ENA]
¡û
>W131026695
AIZU01000075
Bacillota
Enterococcus faecium UAA952 [AIZU]
12521
12448
-
Met
CAT
[ENA]
¡û
>W131027486
AJAJ01000019
Bacillota
Enterococcus faecium ATCC 8459 [AJAJ]
116704
116631
-
Met
CAT
[ENA]
¡û
>WENV180453406
OBXM01000088
[OBXM] human gut metagenome; faeces
120436
120363
-
Ile2
CAT
[ENA]
¡û
>WENV170560534
CYGL01005285
[CYGL] human gut metagenome;
567
642
+
Met
CAT
[ENA]
¡û
>C181028605
CP017792
Bacillota
Enterococcus faecium E240 [CP017792]
2113472
2113397
-
Met
CAT
-
¡û
>C181028676
CP017797
Bacillota
Enterococcus faecium E243 [CP017797]
2113472
2113397
-
Met
CAT
-
¡û
>C181074183
CP022930
Bacillota
Enterococcus durans BDGP3 [CP022930]
2968520
2968445
-
Met
CAT
-
¡û
>C181074184
CP022930
Bacillota
Enterococcus durans BDGP3 [CP022930]
2929455
2929380
-
Met
CAT
-
¡û
>C181090371
CP023780
Bacillota
Enterococcus faecium Efaecium_ER03933.3A [CP023780]
2104920
2104845
-
Met
CAT
-
¡û
>C181090442
CP023784
Bacillota
Enterococcus faecium Efaecium_ER04120.3A [CP023784]
2112231
2112156
-
Met
CAT
-
¡û
>C181090655
CP023799
Bacillota
Enterococcus faecium Efaecium_ER04526.5A [CP023799]
2107872
2107797
-
Met
CAT
-
¡û
>C191184128
CP040907
Bacillota
Enterococcus faecium FB-1 [CP040907]
1258194
1258119
-
Met
CAT
-
¡û
>W1910038565
BEHC01000026
Bacillota
Enterococcus sp. H57 [BEHC]
2097
2172
+
Met
CAT
[ENA]
¡û
>W1910280314
FQST01000019
Bacillota
Enterococcus faecium [FQST]
51569
51494
-
Met
CAT
[ENA]
¡û
>W1910472458
FXEO01000020
Bacillota
Enterococcus faecium VREN2778 [FXEO]
48670
48745
+
Met
CAT
[ENA]
¡û
>W1910472819
FXEU01000018
Bacillota
Enterococcus faecium VREN2777 [FXEU]
48647
48722
+
Met
CAT
[ENA]
¡û
>W1910472944
FXEW01000019
Bacillota
Enterococcus faecium VREN2657 [FXEW]
1769
1694
-
Met
CAT
[ENA]
¡û
>W1910473076
FXEY01000017
Bacillota
Enterococcus faecium VREN2724 [FXEY]
3132
3057
-
Met
CAT
[ENA]
¡û
>W1910474358
FXFT01000020
Bacillota
Enterococcus faecium VREN2830 [FXFT]
1765
1690
-
Met
CAT
[ENA]
¡û
>W1910475469
FXGL01000017
Bacillota
Enterococcus faecium VREN3240 [FXGL]
48670
48745
+
Met
CAT
[ENA]
¡û
>W1910607636
LEQK01000003
Bacillota
Enterococcus faecium 147EA1 [LEQK]
387280
387355
+
Met
CAT
[ENA]
¡û
>W1910607900
LEQP01000001
Bacillota
Enterococcus faecium 176EA1 [LEQP]
566351
566424
+
Met
CAT
[ENA]
¡û
>W1910607938
LEQP01000008
Bacillota
Enterococcus faecium 176EA1 [LEQP]
21867
21940
+
Met
CAT
[ENA]
¡û
>W1910608610
LERC01000004
Bacillota
Enterococcus faecium 284EA1 [LERC]
80465
80540
+
Met
CAT
[ENA]
¡û
>W1910610105
LESD01000002
Bacillota
Enterococcus hirae 175EA1 [LESD]
1532
1607
+
Met
CAT
[ENA]
¡û
>W1910610420
LESI01000003
Bacillota
Enterococcus hirae 41EA1 [LESI]
120039
119964
-
Met
CAT
[ENA]
¡û
>W1910610452
LESI01000008
Bacillota
Enterococcus hirae 41EA1 [LESI]
197898
197823
-
Met
CAT
[ENA]
¡û
>W1910610480
LESJ01000005
Bacillota
Enterococcus hirae 88EA1 [LESJ]
608620
608545
-
Met
CAT
[ENA]
¡û
>W1910998122
NLCQ01000372
Bacillota
Enterococcus faecium VRE2014-195 [NLCQ]
226
301
+
Met
CAT
[ENA]
¡û
>W1911238993
NSDD01000060
Bacillota
Enterococcus hirae 1725 [NSDD]
2047
2122
+
Met
CAT
[ENA]
¡û
>W1911574284
PDFH01000002
Bacillota
Enterococcus faecium FDAARGOS_374 [PDFH]
18390
18463
+
Met
CAT
[ENA]
¡û
>W1911574294
PDFH01000002
Bacillota
Enterococcus faecium FDAARGOS_374 [PDFH]
2565686
2565759
+
Met
CAT
[ENA]
¡û
>W1911581499
PGCT01000084
Bacillota
Enterococcus faecium A201R2B0 [PGCT]
23312
23237
-
Met
CAT
[ENA]
¡û
>W1911587521
PJUY01000007
Bacillota
Enterococcus faecium EN883 [PJUY]
76668
76593
-
Met
CAT
[ENA]
¡û
>W1911589270
PJWE01000032
Bacillota
Enterococcus faecium EN170 [PJWE]
4975
5048
+
Met
CAT
[ENA]
¡û
>W1911702924
QOIW01000077
Bacillota
Enterococcus faecium IHC110 [QOIW]
1073
998
-
Met
CAT
[ENA]
¡û
>W1911703676
QOJJ01000151
Bacillota
Enterococcus faecium IHC111 [QOJJ]
531
606
+
Met
CAT
[ENA]
¡û
>W1911705448
QOKM01000097
Bacillota
Enterococcus faecium IHC129 [QOKM]
1073
998
-
Met
CAT
[ENA]
¡û
>W1911713009
QPUA01000111
Bacillota
Enterococcus faecium VV11 [QPUA]
587
660
+
Met
CAT
[ENA]
¡û
>W1911714855
QPWN01000032
Bacillota
Enterococcus faecium TV10 [QPWN]
6310
6383
+
Met
CAT
[ENA]
¡û
>W1810310703
PTUA01000011
Bacillota
Enterococcus faecium CVM N60252F [PTUA]
64485
64560
+
Met
CAT
[ENA]
¡û
>W1810316410
PTYF01000125
Bacillota
Enterococcus faecium CVM N52777 [PTYF]
44883
44958
+
Met
CAT
[ENA]
¡û
>W1810317872
PTZH01000060
Bacillota
Enterococcus faecium CVM N54107 [PTZH]
1413
1488
+
Met
CAT
[ENA]
¡û
>W1810317892
PTZH01000087
Bacillota
Enterococcus faecium CVM N54107 [PTZH]
31141
31066
-
Met
CAT
[ENA]
¡û
>W1810319150
PUAE01000081
Bacillota
Enterococcus faecium CVM N54671 [PUAE]
6606
6531
-
Met
CAT
[ENA]
¡û
>W1810626303
QHLB01000138
Bacillota
Enterococcus faecium 558 [QHLB]
155
82
-
Met
CAT
[ENA]
¡û
>W2010491700
JAAKDW010000001
Bacillota
Enterococcus sp. ZJ1622 [JAAKDW]
21771
21846
+
Ile2
CAT
[ENA]
¡û
>W2010771107
LESD01000002
Bacillota
Enterococcus hirae 175EA1 [LESD]
1532
1607
+
Met
CAT
[ENA]
¡û
>W2010771422
LESI01000003
Bacillota
Enterococcus hirae 41EA1 [LESI]
120039
119964
-
Ile2
CAT
[ENA]
¡û
>W2010771454
LESI01000008
Bacillota
Enterococcus hirae 41EA1 [LESI]
197898
197823
-
Met
CAT
[ENA]
¡û
>W2010771482
LESJ01000005
Bacillota
Enterococcus hirae 88EA1 [LESJ]
608620
608545
-
Ile2
CAT
[ENA]
¡û
>W2011065769
NSDD01000060
Bacillota
Enterococcus hirae 1725 [NSDD]
2047
2122
+
Ile2
CAT
[ENA]
¡û
>W2011618096
SLUA01000029
Bacillota
Enterococcus hirae AF002B11 [SLUA]
24560
24633
+
Ile2
CAT
[ENA]
¡û
>W2110510527
JAFLIW010000021
Bacillota
Enterococcus lactis 77-1 [JAFLIW]
10992
11065
+
Ile2
CAT
[ENA]
¡û
>W2110623675
JAHLRJ010000048
Bacillota
Enterococcus sp. S181_ASV_20 [JAHLRJ]
21297
21222
-
Ile2
CAT
[ENA]
¡û
>W2110623797
JAHLRL010000076
Bacillota
Enterococcus sp. S177_ASV_20 [JAHLRL]
12423
12348
-
Ile2
CAT
[ENA]
¡û
>W2110624082
JAHLRQ010000138
Bacillota
Enterococcus sp. S161_ASV_20 [JAHLRQ]
1152
1077
-
Ile2
CAT
[ENA]
¡û
>W2110624206
JAHLRS010000848
Bacillota
Enterococcus sp. S157_ASV_20 [JAHLRS]
1152
1077
-
Ile2
CAT
[ENA]
¡û
>W2110624704
JAHLSC010000065
Bacillota
Enterococcus sp. S117_ASV_20 [JAHLSC]
12403
12328
-
Ile2
CAT
[ENA]
¡û
>W2110624827
JAHLSE010000188
Bacillota
Enterococcus sp. S113_ASV_20 [JAHLSE]
319
394
+
Ile2
CAT
[ENA]
¡û
>C211209047
CP065547
Bacillota
Enterococcus faecium Dallas 1 [CP065547]
2135104
2135029
-
Ile2
CAT
-
¡û
>C211217488
CP065928
Bacillota
Enterococcus faecium Dallas 5 [CP065928]
2156753
2156828
+
Ile2
CAT
-
¡û
>C211229640
CP066591
Bacillota
Enterococcus faecium Dallas 107_1 [CP066591]
2138086
2138011
-
Ile2
CAT
-
¡û
>C211229719
CP066606
Bacillota
Enterococcus faecium Dallas 124_1 [CP066606]
592410
592485
+
Ile2
CAT
-
¡û
>W10108170
ACZZ01000110
Bacillota
Enterococcus faecium D344SRF [ACZZ]
276
351
+
Met
CAT
[ENA]
¡û
>C231044836
CP038164
Bacillota
Enterococcus faecium HB2-2 [CP038164]
2394489
2394564
+
Ile2
CAT
-
¡û
>C231367757
CP096211
Bacillota
Enterococcus faecium UCH1 [CP096211]
569950
570025
+
Ile2
CAT
-
¡û
>C231531930
CP110360
Bacillota
Enterococcus faecium AKSZ-142 [CP110360]
950677
950752
+
Ile2
CAT
-
¡û
>W11110557
ACZZ01000110
Bacillota
Enterococcus faecium D344SRF [ACZZ]
276
351
+
Met
CAT
[ENA]
¡û
>W1511437291
JUKT01000187
Bacillota
Enterococcus faecium 990_EFCM [JUKT]
76
3
-
Met
CAT
[ENA]
¡û
>W1511437954
JULR01000128
Bacillota
Enterococcus faecium 967_EFCM [JULR]
1095
1168
+
Met
CAT
[ENA]
¡û
>W1511438039
JULU01000196
Bacillota
Enterococcus faecium 964_EFCM [JULU]
1095
1168
+
Met
CAT
[ENA]
¡û
>W1511588976
LBCV01000265
Bacillota
Enterococcus faecium VRE1558 [LBCV]
1053
1126
+
Met
CAT
[ENA]
¡û
>C161033528
CP011281
Bacillota
Enterococcus faecium E39 [CP011281]
2037393
2037318
-
Met
CAT
-
¡û
>C161072213
CP014449
Bacillota
Enterococcus faecium ATCC 700221 [CP014449]
2128489
2128414
-
Met
CAT
-
¡û
>C161072219
CP014449
Bacillota
Enterococcus faecium ATCC 700221 [CP014449]
1649191
1649116
-
Met
CAT
-
¡û
>W121121926
AMAT01000208
Bacillota
Enterococcus faecium ERV26 [AMAT]
1204
1129
-
Met
CAT
[ENA]
¡û
>W121121767
AMAP01000090
Bacillota
Enterococcus faecium P1123 [AMAP]
12357
12284
-
Met
CAT
[ENA]
¡û
>C131012238
CP004063
Bacillota
Enterococcus faecium ATCC 8459 = NRRL B-2354 [CP004063]
1202585
1202658
+
Met
CAT
[Ensembl]
¡û
>W1610800616
LOQQ01000048
Bacillota
Enterococcus faecium [LOQQ]
2389
2314
-
Met
CAT
[ENA]
¡û
>W1610800619
LOQQ01000071
Bacillota
Enterococcus faecium [LOQQ]
1682
1607
-
Met
CAT
[ENA]
¡û
>W1610800631
LOQQ01000160
Bacillota
Enterococcus faecium [LOQQ]
299
374
+
Met
CAT
[ENA]
¡û
>W1610841601
LPUE01000003
Bacillota
Enterococcus faecium C68 [LPUE]
93751
93826
+
Met
CAT
[ENA]
¡û
>W1610872093
LRAS01000237
Bacillota
Enterococcus faecium [LRAS]
296
371
+
Met
CAT
[ENA]
¡û
>W1610872124
LRAT01000091
Bacillota
Enterococcus faecium [LRAT]
2389
2314
-
Met
CAT
[ENA]
¡û
>W1610872210
LRAU01000193
Bacillota
Enterococcus faecium [LRAU]
2389
2314
-
Met
CAT
[ENA]
¡û
>W1610872269
LRAV01000118
Bacillota
Enterococcus faecium [LRAV]
296
371
+
Met
CAT
[ENA]
¡û
>W1610872302
LRAW01000095
Bacillota
Enterococcus faecium [LRAW]
1682
1607
-
Met
CAT
[ENA]
¡û
>W1610872303
LRAW01000098
Bacillota
Enterococcus faecium [LRAW]
35536
35461
-
Met
CAT
[ENA]
¡û
>W1610872305
LRAW01000115
Bacillota
Enterococcus faecium [LRAW]
296
371
+
Met
CAT
[ENA]
¡û
>W1610872388
LRAX01000127
Bacillota
Enterococcus faecium [LRAX]
2204
2129
-
Met
CAT
[ENA]
¡û
>W1610872461
LRAY01000244
Bacillota
Enterococcus faecium [LRAY]
1361
1286
-
Met
CAT
[ENA]
¡û
>W1610872467
LRAZ01000020
Bacillota
Enterococcus faecium [LRAZ]
35527
35452
-
Met
CAT
[ENA]
¡û
>W1610872507
LRAZ01000118
Bacillota
Enterococcus faecium [LRAZ]
2389
2314
-
Met
CAT
[ENA]
¡û
>W1610872523
LRAZ01000177
Bacillota
Enterococcus faecium [LRAZ]
63
138
+
Met
CAT
[ENA]
¡û
>W1610872551
LRBA01000093
Bacillota
Enterococcus faecium [LRBA]
296
371
+
Met
CAT
[ENA]
¡û
>W1610872588
LRBB01000005
Bacillota
Enterococcus faecium [LRBB]
296
371
+
Met
CAT
[ENA]
¡û
>W1610872589
LRBB01000006
Bacillota
Enterococcus faecium [LRBB]
299
374
+
Met
CAT
[ENA]
¡û
>W1610872759
LRBD01000138
Bacillota
Enterococcus faecium [LRBD]
296
371
+
Met
CAT
[ENA]
¡û
>W1610872811
LRBE01000140
Bacillota
Enterococcus faecium [LRBE]
296
371
+
Met
CAT
[ENA]
¡û
>W1610880979
LRHK01000001
Bacillota
Enterococcus faecium [LRHK]
1953114
1953189
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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