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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21367 (104 seq.)
>W1711096457
LTHT01000162
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
27245
27335
+
Ser
GCT
[ENA]
¡û
>WENV180117260
OARD01016690
[OARD] human gut metagenome; ENVO:feces
153
243
+
Ser
GCT
[ENA]
¢þ
>WENV180433391
OBWJ01002794
[OBWJ] human gut metagenome; faeces
57
147
+
Ser
GCT
[ENA]
¢þ
>WENV181047510
ODXZ01011374
[ODXZ] human metagenome; G_DNA_Stool
665
755
+
Ser
GCT
[ENA]
¢þ
>WENV181340913
OFMH01003132
[OFMH] human gut metagenome; human gut
2310
2220
-
Ser
GCT
[ENA]
¢þ
>WENV181363234
OFOU01000015
[OFOU] human gut metagenome; human gut
39083
39173
+
Ser
GCT
[ENA]
¢þ
>WENV181427983
OGCU01000545
[OGCU] metagenome; Human gut stool
16603
16693
+
Ser
GCT
[ENA]
¢þ
>WENV181428352
OGCV01000196
[OGCV] metagenome; Human gut stool
23659
23749
+
Ser
GCT
[ENA]
¢þ
>WENV181428951
OGCW01003656
[OGCW] metagenome; Human gut stool
602
512
-
Ser
GCT
[ENA]
¢þ
>WENV181438619
OGDJ01000819
[OGDJ] metagenome; Human gut stool
11781
11691
-
Ser
GCT
[ENA]
¢þ
>WENV181439053
OGDL01000093
[OGDL] metagenome; Human gut stool
15055
15145
+
Ser
GCT
[ENA]
¢þ
>WENV181446338
OGDT01001057
[OGDT] metagenome; Human gut stool
1840
1930
+
Ser
GCT
[ENA]
¢þ
>WENV181454463
OGED01002467
[OGED] metagenome; Human gut stool
4205
4115
-
Ser
GCT
[ENA]
¢þ
>WENV181458507
OGEK01000039
[OGEK] metagenome; Human gut stool
103796
103706
-
Ser
GCT
[ENA]
¢þ
>WENV181460876
OGEM01000004
[OGEM] metagenome; Human gut stool
37248
37158
-
Ser
GCT
[ENA]
¢þ
>WENV181465123
OGEP01008989
[OGEP] metagenome; Human gut stool
92
182
+
Ser
GCT
[ENA]
¢þ
>WENV181467147
OGER01000856
[OGER] metagenome; Human gut stool
11064
10974
-
Ser
GCT
[ENA]
¢þ
>WENV181471323
OGEW01000993
[OGEW] metagenome; Human gut stool
927
1017
+
Ser
GCT
[ENA]
¢þ
>WENV181472289
OGEZ01000559
[OGEZ] metagenome; Human gut stool
57
147
+
Ser
GCT
[ENA]
¢þ
>WENV181474053
OGFC01001381
[OGFC] metagenome; Human gut stool
2576
2486
-
Ser
GCT
[ENA]
¢þ
>WENV181475618
OGFE01000744
[OGFE] metagenome; Human gut stool
16244
16334
+
Ser
GCT
[ENA]
¢þ
>WENV181483896
OGFL01000044
[OGFL] metagenome; Human gut stool
42138
42048
-
Ser
GCT
[ENA]
¢þ
>WENV181498475
OGGF01003702
[OGGF] metagenome; Human gut stool
943
853
-
Ser
GCT
[ENA]
¢þ
>WENV181507639
OGGP01000149
[OGGP] metagenome; Human gut stool
49323
49233
-
Ser
GCT
[ENA]
¢þ
>WENV181510607
OGGR01000537
[OGGR] metagenome; Human gut stool
3222
3312
+
Ser
GCT
[ENA]
¢þ
>WENV181527135
OGHK01000376
[OGHK] metagenome; Human gut stool
21304
21394
+
Ser
GCT
[ENA]
¢þ
>WENV181533500
OGHR01001457
[OGHR] metagenome; Human gut stool
1923
2013
+
Ser
GCT
[ENA]
¢þ
>WENV181536025
OGHV01001610
[OGHV] metagenome; Human gut stool
11494
11404
-
Ser
GCT
[ENA]
¢þ
>WENV181539987
OGIA01001524
[OGIA] metagenome; Human gut stool
7935
7845
-
Ser
GCT
[ENA]
¢þ
>WENV181550770
OGIN01000083
[OGIN] metagenome; Human gut stool
45228
45138
-
Ser
GCT
[ENA]
¢þ
>WENV181557862
OGIW01000324
[OGIW] metagenome; Human gut stool
37504
37594
+
Ser
GCT
[ENA]
¢þ
>WENV181560424
OGJC01000177
[OGJC] metagenome; Human gut stool
34790
34880
+
Ser
GCT
[ENA]
¢þ
>WENV181561309
OGJD01001052
[OGJD] metagenome; Human gut stool
17433
17523
+
Ser
GCT
[ENA]
¢þ
>WENV181563377
OGJG01027270
[OGJG] metagenome; Human gut stool
751
661
-
Ser
GCT
[ENA]
¢þ
>WENV181567165
OGJJ01001895
[OGJJ] metagenome; Human gut stool
1944
2034
+
Ser
GCT
[ENA]
¢þ
>WENV181568990
OGJK01016781
[OGJK] metagenome; Human gut stool
2371
2281
-
Ser
GCT
[ENA]
¢þ
>WENV181569735
OGJM01000163
[OGJM] metagenome; Human gut stool
16736
16826
+
Ser
GCT
[ENA]
¢þ
>WENV181570293
OGJN01000231
[OGJN] metagenome; Human gut stool
34133
34043
-
Ser
GCT
[ENA]
¢þ
>WENV181574108
OGJS01006152
[OGJS] metagenome; Human gut stool
962
1052
+
Ser
GCT
[ENA]
¢þ
>WENV181577973
OGJY01000149
[OGJY] metagenome; Human gut stool
34102
34192
+
Ser
GCT
[ENA]
¢þ
>WENV181579569
OGJZ01000278
[OGJZ] metagenome; Human gut stool
27452
27362
-
Ser
GCT
[ENA]
¢þ
>WENV181588315
OGKH01011595
[OGKH] metagenome; Human gut stool
421
511
+
Ser
GCT
[ENA]
¢þ
>WENV181588480
OGKI01001886
[OGKI] metagenome; Human gut stool
909
819
-
Ser
GCT
[ENA]
¢þ
>WENV181588989
OGKK01000283
[OGKK] metagenome; Human gut stool
1829
1919
+
Ser
GCT
[ENA]
¢þ
>WENV181589601
OGKL01010290
[OGKL] metagenome; Human gut stool
405
495
+
Ser
GCT
[ENA]
¢þ
>WENV181590428
OGKN01006628
[OGKN] metagenome; Human gut stool
575
485
-
Ser
GCT
[ENA]
¢þ
>WENV181609106
OGLN01007994
[OGLN] metagenome; Human gut stool
57
147
+
Ser
GCT
[ENA]
¢þ
>WENV181610304
OGLQ01000011
[OGLQ] metagenome; Human gut stool
65551
65461
-
Ser
GCT
[ENA]
¢þ
>WENV181617412
OGMA01014359
[OGMA] metagenome; Human gut stool
881
971
+
Ser
GCT
[ENA]
¢þ
>WENV181623523
OGMI01000731
[OGMI] metagenome; Human gut stool
3038
3128
+
Ser
GCT
[ENA]
¢þ
>WENV181627668
OGMN01002722
[OGMN] metagenome; Human gut stool
7353
7443
+
Ser
GCT
[ENA]
¢þ
>WENV181632591
OGMT01039610
[OGMT] metagenome; Human gut stool
171
261
+
Ser
GCT
[ENA]
¢þ
>WENV181636217
OGMZ01001110
[OGMZ] metagenome; Human gut stool
4924
4834
-
Ser
GCT
[ENA]
¢þ
>WENV181649390
OGNS01000480
[OGNS] metagenome; Human gut stool
3220
3310
+
Ser
GCT
[ENA]
¢þ
>WENV181652239
OGNW01001589
[OGNW] metagenome; Human gut stool
3239
3149
-
Ser
GCT
[ENA]
¢þ
>WENV181794591
OGRS01001044
[OGRS] human gut metagenome; faeces
3792
3882
+
Ser
GCT
[ENA]
¢þ
>WENV181819845
OGUB01011158
[OGUB] metagenome; Human gut stool
271
181
-
Ser
GCT
[ENA]
¢þ
>WENV181820449
OGUD01000011
[OGUD] metagenome; Human gut stool
18556
18646
+
Ser
GCT
[ENA]
¢þ
>WENV181823262
OGUJ01000120
[OGUJ] metagenome; Human gut stool
65547
65457
-
Ser
GCT
[ENA]
¢þ
>WENV181859990
OGWQ01035346
[OGWQ] human gut metagenome; faeces
593
503
-
Ser
GCT
[ENA]
¢þ
>WENV181860324
OGWR01000516
[OGWR] human gut metagenome; faeces
6432
6522
+
Ser
GCT
[ENA]
¢þ
>WENV181868187
OGWW01032625
[OGWW] human gut metagenome; faeces
748
658
-
Ser
GCT
[ENA]
¢þ
>WENV181878204
OGXE01001542
[OGXE] human gut metagenome; faeces
3789
3879
+
Ser
GCT
[ENA]
¢þ
>WENV181891947
OGXP01000131
[OGXP] human gut metagenome; faeces
23418
23508
+
Ser
GCT
[ENA]
¢þ
>WENV181899568
OGXU01006650
[OGXU] human gut metagenome; faeces
3220
3310
+
Ser
GCT
[ENA]
¢þ
>WENV181905646
OGXY01001023
[OGXY] human gut metagenome; faeces
3108
3198
+
Ser
GCT
[ENA]
¢þ
>WENV181946791
OGZD01000176
[OGZD] human gut metagenome; faeces
18554
18644
+
Ser
GCT
[ENA]
¢þ
>WENV181948148
OGZE01000550
[OGZE] human gut metagenome; faeces
10602
10512
-
Ser
GCT
[ENA]
¢þ
>WENV181952400
OGZI01000218
[OGZI] human gut metagenome; faeces
13801
13891
+
Ser
GCT
[ENA]
¢þ
>WENV181958647
OGZM01000240
[OGZM] human gut metagenome; faeces
23672
23762
+
Ser
GCT
[ENA]
¢þ
>WENV181965402
OGZT01000474
[OGZT] human gut metagenome; faeces
13894
13804
-
Ser
GCT
[ENA]
¢þ
>WENV181970787
OGZY01000054
[OGZY] human gut metagenome; faeces
31234
31324
+
Ser
GCT
[ENA]
¢þ
>WENV181986693
OHAM01002193
[OHAM] human gut metagenome; faeces
10673
10763
+
Ser
GCT
[ENA]
¢þ
>WENV181993983
OHAS01007673
[OHAS] human gut metagenome; faeces
146
56
-
Ser
GCT
[ENA]
¢þ
>WENV182124101
OHJQ01002369
[OHJQ] human gut metagenome; feces
1267
1357
+
Ser
GCT
[ENA]
¢þ
>WENV182227666
OHRG01002829
[OHRG] human gut metagenome; feces
2325
2235
-
Ser
GCT
[ENA]
¢þ
>WENV182228573
OHRH01005210
[OHRH] human gut metagenome; feces
2599
2689
+
Ser
GCT
[ENA]
¢þ
>WENV182485474
OIRP01007690
[OIRP] human gut metagenome; human gut
609
519
-
Ser
GCT
[ENA]
¢þ
>WENV182866465
OKRR01000290
[OKRR] human gut metagenome; faeces
55665
55575
-
Ser
GCT
[ENA]
¢þ
>WENV182908040
OKTF01005210
[OKTF] human gut metagenome; feces
971
881
-
Ser
GCT
[ENA]
¢þ
>WENV183290148
OLSH01000003
[OLSH] human gut metagenome; faeces
41944
42034
+
Ser
GCT
[ENA]
¢þ
>WENV183502171
OMGS01060036
[OMGS] human gut metagenome; human gut
142
232
+
Ser
GCT
[ENA]
¢þ
>WENV183576922
OOCJ01002840
[OOCJ] human gut metagenome; human gut
1850
1940
+
Ser
GCT
[ENA]
¢þ
>WENV183760743
PPYE01236430
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3770
3860
+
Ser
GCT
[ENA]
¢þ
>WENV183764039
PPYE01312274
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
7878
7968
+
Ser
GCT
[ENA]
¢þ
>WENV183780425
PPYF01171701
[PPYF] human gut metagenome; stool from patient with Crohn's disease
34838
34748
-
Ser
GCT
[ENA]
¢þ
>C181003935
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
3638252
3638162
-
Ser
GCT
-
¡û
>C181160949
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
994790
994880
+
Ser
GCT
-
¡û
>C181160993
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
1338564
1338654
+
Ser
GCT
-
¡û
>C181161050
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1658794
1658884
+
Ser
GCT
-
¡û
>C181216746
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
107775
107865
+
Ser
GCT
-
¡û
>C191210238
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
2791861
2791771
-
Ser
GCT
-
¡û
>W09118502
ACDB01000005
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [ACDB]
162947
163037
+
Ser
GCT
[ENA]
¡û
>W09118768
ACDH01000021
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
42286
42376
+
Ser
GCT
[ENA]
¡û
>C191219277
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3616140
3616230
+
Ser
GCT
-
¡û
>W09125182
ACIE01000044
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
35119
35209
+
Ser
GCT
[ENA]
¡û
>W1910194498
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
862597
862507
-
Ser
GCT
[ENA]
¡û
>W1810790016
QRHI01000001
Fusobacteriota
Fusobacterium mortiferum AM25-18LB [QRHI]
264128
264218
+
Ser
GCT
[ENA]
¡û
>W1810790171
QRHL01000003
Fusobacteriota
Fusobacterium mortiferum AM25-1 [QRHL]
126828
126738
-
Ser
GCT
[ENA]
¡û
>W1810791356
QRIG01000013
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
41559
41649
+
Ser
GCT
[ENA]
¡û
>W1810818377
QSDE01000002
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
42073
42163
+
Ser
GCT
[ENA]
¡û
>W1810832221
QSOW01000013
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
36602
36692
+
Ser
GCT
[ENA]
¡û
>W1810839547
QSTZ01000001
Fusobacteriota
Fusobacterium mortiferum OM06-15BH [QSTZ]
227525
227615
+
Ser
GCT
[ENA]
¡û
>W121021750
AGWJ01000043
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
34544
34454
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK