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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21373 (69 seq.)
>W1710870059
LMKF01000022
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
51072
50983
-
Ser
GCT
[ENA]
¡û
>W1710876170
LMOZ01000003
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
239051
238960
-
Ser
GCT
[ENA]
¡û
>W1710876541
LMPH01000005
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
57349
57440
+
Ser
GCT
[ENA]
¡û
>W1710878560
LMRB01000001
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
853278
853369
+
Ser
GCT
[ENA]
¡û
>W1710909134
LNQG01000017
Actinomycetota
Microbacterium enclense [LNQG]
28586
28495
-
Ser
GCT
[ENA]
¡û
>W1710921172
LNZG01000018
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
17210
17121
-
Ser
GCT
[ENA]
¡û
>W1711009294
LQQP01000023
Actinomycetota
Microbacterium sp. T32 [LQQP]
60912
60821
-
Ser
GCT
[ENA]
¡û
>W1711270752
LZEM01000018
Actinomycetota
Microbacterium arborescens [LZEM]
401815
401724
-
Ser
GCT
[ENA]
¡û
>W1711385534
MEEH01000116
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
609
520
-
Ser
GCT
[ENA]
¡û
>W131162273
AQYK01000002
Actinomycetota
Leifsonia sp. 109 [AQYK]
1607305
1607214
-
Ser
GCT
[ENA]
¡û
>W131184643
ARTB01000003
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
171235
171326
+
Ser
GCT
[ENA]
¡û
>W1711503423
MKTP01000001
Actinomycetota
Microbacterium sp. 71-36 [MKTP]
1612879
1612790
-
Ser
GCT
[ENA]
¡û
>W1711724767
MTQM01000005
Actinomycetota
Microbacterium sp. CSI-V [MTQM]
91990
91901
-
Ser
GCT
[ENA]
¡û
>C171065806
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
2467081
2467172
+
Ser
GCT
-
¡û
>C171073387
CP018134
Actinomycetota
Microbacterium paludicola CC3 [CP018134]
1627889
1627798
-
Ser
GCT
-
¡û
>C012845
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
232141
232053
-
Ser
GCT
[Ensembl]
¡û
>W141223183
BADA01000313
Actinomycetota
Microbacterium sp. B19 [BADA]
5487
5396
-
Ser
GCT
[ENA]
¡û
>W141230020
BASQ01000001
Actinomycetota
Microbacterium sp. TS-1 [BASQ]
1325112
1325021
-
Ser
GCT
[ENA]
¡û
>WENV183727381
PJTO01039322
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
228
137
-
Ser
GCT
[ENA]
¢þ
>WENV183728235
PJTQ01000004
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
334407
334316
-
Ser
GCT
[ENA]
¢þ
>WENV183738016
PJUD01067333
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
209
298
+
Ser
GCT
[ENA]
¢þ
>WENV183740447
PJUF01002242
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2996
2905
-
Ser
GCT
[ENA]
¢þ
>C191056015
CP027929
Actinomycetota
Microbacterium sp. SGAir0570 [CP027929]
690389
690480
+
Ser
GCT
-
¡û
>C191119725
CP034121
Actinomycetota
Microbacterium sp. RG1 [CP034121]
3048034
3048125
+
Ser
GCT
-
¡û
>C191122375
CP034245
Actinomycetota
Microbacterium sp. 10M-3C3 [CP034245]
3000794
3000704
-
Ser
GCT
-
¡û
>W141739344
JNNT01000043
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
4526
4437
-
Ser
GCT
[ENA]
¡û
>W1910181936
BJML01000010
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
4731
4642
-
Ser
GCT
[ENA]
¡û
>W1910913719
NHRF01000005
Actinomycetota
Microbacterium sp. AISO3 [NHRF]
43994
44085
+
Ser
GCT
[ENA]
¡û
>W1911140293
NOYP01000015
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
60194
60283
+
Ser
GCT
[ENA]
¡û
>W1911159667
NPMR01000002
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
1378869
1378778
-
Ser
GCT
[ENA]
¡û
>W1911535344
OLMV01000002
Actinomycetota
Microbacterium timonense Marseille-P5731 [OLMV]
506630
506541
-
Ser
GCT
[ENA]
¡û
>W1810234115
PPEE01000003
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
701518
701607
+
Ser
GCT
[ENA]
¡û
>W1810262629
PQSV01000001
Actinomycetota
Microbacterium sp. Ru50 [PQSV]
1343420
1343329
-
Ser
GCT
[ENA]
¡û
>W1810475483
QAJB01000120
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
5420
5510
+
Ser
GCT
[ENA]
¡û
>W1810538339
QDFT01000009
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
23220
23130
-
Ser
GCT
[ENA]
¡û
>W1810684455
QKXI01000006
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
1518
1608
+
Ser
GCT
[ENA]
¡û
>W1810698887
QMBN01000002
Actinomycetota
Microbacterium sp. SMR1 [QMBN]
812369
812460
+
Ser
GCT
[ENA]
¡û
>W1810722499
QNUV01000021
Actinomycetota
Microbacterium arborescens DSM 20754 [QNUV]
232251
232160
-
Ser
GCT
[ENA]
¡û
>W1810722563
QNUW01000019
Actinomycetota
Microbacterium arborescens RCB1 [QNUW]
518289
518380
+
Ser
GCT
[ENA]
¡û
>W1810787040
QRDK01000003
Actinomycetota
Microbacterium sp. AG157 [QRDK]
54479
54390
-
Ser
GCT
[ENA]
¡û
>W1810861306
QTTU01000001
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
1531225
1531314
+
Ser
GCT
[ENA]
¡û
>C11115178
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
2296020
2296111
+
Ser
GCT
[Ensembl]
¡û
>W1511528879
JYIY01000069
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
6508
6599
+
Ser
GCT
[ENA]
¡û
>W1511691454
LFYU01002524
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
304
393
+
Ser
GCT
[ENA]
¡û
>C161076868
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
2068518
2068427
-
Ser
GCT
[Ensembl]
¡û
>W1610590781
LDRR01000216
Actinomycetota
Microbacterium testaceum [LDRR]
6976
7065
+
Ser
GCT
[ENA]
¡û
>W1610590790
LDRS01000028
Actinomycetota
Microbacterium testaceum [LDRS]
40319
40408
+
Ser
GCT
[ENA]
¡û
>W1610590840
LDRT01000032
Actinomycetota
Microbacterium testaceum [LDRT]
8142
8231
+
Ser
GCT
[ENA]
¡û
>W1610590872
LDRU01000011
Actinomycetota
Microbacterium testaceum [LDRU]
31772
31861
+
Ser
GCT
[ENA]
¡û
>W1610590923
LDRV01000038
Actinomycetota
Microbacterium testaceum [LDRV]
6759
6848
+
Ser
GCT
[ENA]
¡û
>W1610732405
LMKF01000022
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
51072
50983
-
Ser
GCT
[ENA]
¡û
>W1610738516
LMOZ01000003
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
239051
238960
-
Ser
GCT
[ENA]
¡û
>W1610738887
LMPH01000005
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
57349
57440
+
Ser
GCT
[ENA]
¡û
>W1610740906
LMRB01000001
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
853278
853369
+
Ser
GCT
[ENA]
¡û
>W1610767493
LNQG01000017
Actinomycetota
Microbacterium enclense [LNQG]
28586
28495
-
Ser
GCT
[ENA]
¡û
>W1610857814
LQQP01000023
Actinomycetota
Microbacterium sp. T32 [LQQP]
60912
60821
-
Ser
GCT
[ENA]
¡û
>W1611030316
LZEM01000018
Actinomycetota
Microbacterium arborescens [LZEM]
401815
401724
-
Ser
GCT
[ENA]
¡û
>W1710510856
FMYG01000009
Actinomycetota
Microbacterium enclense [FMYG]
28586
28495
-
Ser
GCT
[ENA]
¡û
>W1710525080
FNJG01000001
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
63849
63760
-
Ser
GCT
[ENA]
¡û
>W1710525398
FNJN01000002
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
605650
605739
+
Ser
GCT
[ENA]
¡û
>W1710526724
FNKN01000001
Actinomycetota
Microbacterium sp. cf332 [FNKN]
1304626
1304537
-
Ser
GCT
[ENA]
¡û
>W1710534574
FNRY01000001
Actinomycetota
Microbacterium humi [FNRY]
673728
673637
-
Ser
GCT
[ENA]
¡û
>W1710597999
FTNQ01000002
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
955479
955570
+
Ser
GCT
[ENA]
¡û
>W1710600051
FTPQ01000001
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
63722
63633
-
Ser
GCT
[ENA]
¡û
>W1710710061
LDRR01000216
Actinomycetota
Microbacterium testaceum [LDRR]
6976
7065
+
Ser
GCT
[ENA]
¡û
>W1710710070
LDRS01000028
Actinomycetota
Microbacterium testaceum [LDRS]
40319
40408
+
Ser
GCT
[ENA]
¡û
>W1710710120
LDRT01000032
Actinomycetota
Microbacterium testaceum [LDRT]
8142
8231
+
Ser
GCT
[ENA]
¡û
>W1710710152
LDRU01000011
Actinomycetota
Microbacterium testaceum [LDRU]
31772
31861
+
Ser
GCT
[ENA]
¡û
>W1710710203
LDRV01000038
Actinomycetota
Microbacterium testaceum [LDRV]
6759
6848
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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