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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21486 (58 seq.)
>W1710854403
LLXM01000010
Gammaproteobacteria
Marinobacter sp. P4B1 [LLXM]
244666
244756
+
Ser
TGA
[ENA]
¡û
>W1710945160
LORG01000004
Gammaproteobacteria
Marinobacter sp. YWL01 [LORG]
170269
170359
+
Ser
TGA
[ENA]
¡û
>W1711221554
LXRF01000002
Gammaproteobacteria
Marinobacter adhaerens [LXRF]
911011
911101
+
Ser
TGA
[ENA]
¡û
>W1711229550
LXYN01000036
Gammaproteobacteria
Marinobacter sp. EhN04 [LXYN]
150004
149914
-
Ser
TGA
[ENA]
¡û
>W1711388966
MEIY01000001
Gammaproteobacteria
Marinobacter sp. X15-166B [MEIY]
3258119
3258029
-
Ser
TGA
[ENA]
¡û
>W1711687822
MSCW01000005
Gammaproteobacteria
Marinobacter lutaoensis [MSCW]
327355
327265
-
Ser
TGA
[ENA]
¡û
>C171066375
CP017715
Gammaproteobacteria
Marinobacter salinus Hb8 [CP017715]
1142017
1142107
+
Ser
TGA
-
¡û
>WENV181233548
OFET01000005
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
208302
208392
+
Ser
TGA
[ENA]
¡û
>WENV182546117
OJBO01001076
[OJBO] seawater metagenome; Sea water
3482
3392
-
Ser
TGA
[ENA]
¡û
>WENV182555761
OJDD01000430
[OJDD] seawater metagenome; Sea water
11022
11112
+
Ser
TGA
[ENA]
¡û
>WENV182557544
OJDK01000163
[OJDK] seawater metagenome; Sea water
19272
19182
-
Ser
TGA
[ENA]
¡û
>WENV182559503
OJDQ01000007
[OJDQ] seawater metagenome; Sea water
29408
29318
-
Ser
TGA
[ENA]
¡û
>WENV182574080
OJFR01000003
[OJFR] seawater metagenome; Sea water
126905
126995
+
Ser
TGA
[ENA]
¡û
>WENV182581120
OJGX01000165
[OJGX] seawater metagenome; Sea water
28989
29079
+
Ser
TGA
[ENA]
¡û
>WENV182583586
OJHE01000019
[OJHE] seawater metagenome; Sea water
169854
169944
+
Ser
TGA
[ENA]
¡û
>WENV170172954
CEOQ01164203
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
513
603
+
Ser
TGA
[ENA]
¡û
>WENV170234143
CEQK01012218
[CEQK] marine metagenome genome assembly TARA_076_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
757
847
+
Ser
TGA
[ENA]
¡û
>WENV170412151
CEUK01012656
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4960
5050
+
Ser
TGA
[ENA]
¡û
>WENV170460456
CEVC01154410
[CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5468
5378
-
Ser
TGA
[ENA]
¡û
>WENV170735609
LULL01005416
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
1781
1871
+
Ser
TGA
[ENA]
¡û
>WENV170744323
LULX01000267
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
12655
12565
-
Ser
TGA
[ENA]
¡û
>WENV170744325
LULX01000287
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
23445
23355
-
Ser
TGA
[ENA]
¡û
>WENV170744343
LULX01000402
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
97
7
-
Ser
TGA
[ENA]
¡û
>WENV170830445
MDSZ01027028
[MDSZ] marine metagenome; seawater
68728
68818
+
Ser
TGA
[ENA]
¡û
>WENV170851740
MDTA01136959
[MDTA] marine metagenome; seawater
98
8
-
Ser
TGA
[ENA]
¡û
>WENV170898744
MDTD01130483
[MDTD] marine metagenome; seawater
12783
12693
-
Ser
TGA
[ENA]
¡û
>WENV170910061
MDTE01086543
[MDTE] marine metagenome; seawater
2463
2553
+
Ser
TGA
[ENA]
¡û
>WENV170926119
MDTG01095452
[MDTG] marine metagenome; seawater
10335
10425
+
Ser
TGA
[ENA]
¡û
>WENV170962004
MRWF01001987
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
4711
4621
-
Ser
TGA
[ENA]
¡û
>WENV170962232
MRWF01009874
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
8056
8146
+
Ser
TGA
[ENA]
¡û
>WENV170962838
MRWF01028450
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
111
21
-
Ser
TGA
[ENA]
¡û
>W141703106
JMLY01000001
Gammaproteobacteria
Marinobacter sp. HL-58 [JMLY]
2842777
2842687
-
Ser
TGA
[ENA]
¡û
>W1910000677
AOML01000393
Gammaproteobacteria
Marinobacter salsuginis SD-14B [AOML]
164
254
+
Ser
TGA
[ENA]
¡û
>W1810276892
PSSW01000008
Gammaproteobacteria
Marinobacter flavimaris LMG 23834 [PSSW]
165720
165810
+
Ser
TGA
[ENA]
¡û
>W1810276952
PSSX01000020
Gammaproteobacteria
Marinobacter maroccanus N4 [PSSX]
3205
3115
-
Ser
TGA
[ENA]
¡û
>W1810425752
PYVH01000027
Gammaproteobacteria
Marinobacter sp. B9-2 [PYVH]
35930
36020
+
Ser
TGA
[ENA]
¡û
>W1810463456
PZZO01000003
Gammaproteobacteria
Marinobacter sp. PT19DW [PZZO]
124842
124752
-
Ser
TGA
[ENA]
¡û
>W1810786851
QRDH01000001
Gammaproteobacteria
Marinobacter flavimaris KCTC 12185 [QRDH]
936426
936516
+
Ser
TGA
[ENA]
¡û
>C151017493
CP007151
Gammaproteobacteria
Marinobacter similis A3d10 [CP007151]
351273
351363
+
Ser
TGA
[Ensembl]
¡û
>C151087531
CP011929
Gammaproteobacteria
Marinobacter sp. CP1 [CP011929]
4630382
4630292
-
Ser
TGA
-
¡û
>W2010071365
AOML01000393
Gammaproteobacteria
Marinobacter salsuginis SD-14B [AOML]
164
254
+
Ser
TGA
[ENA]
¡û
>W2010080604
BGZI01000022
Gammaproteobacteria
Marinobacter salsuginis NBRC 109114 [BGZI]
54272
54362
+
Ser
TGA
[ENA]
¡û
>W2010643410
JABWTC010000007
Gammaproteobacteria
Marinobacter lutaoensis KAZ22 [JABWTC]
112203
112293
+
Ser
TGA
[ENA]
¡û
>W2011706540
SWKM01000015
Gammaproteobacteria
Marinobacter sp. LZ-8 [SWKM]
39692
39602
-
Ser
TGA
[ENA]
¡û
>W2110048177
BMXV01000008
Gammaproteobacteria
Marinobacter zhanjiangensis KCTC 22280 [BMXV]
38394
38484
+
Ser
TGA
[ENA]
¡û
>W2110429254
JAEMQH010000002
Gammaproteobacteria
Marinobacter sediminum R65 [JAEMQH]
933024
933114
+
Ser
TGA
[ENA]
¡û
>W2110430028
JAEMVF010000007
Gammaproteobacteria
Marinobacter sp. MC3 [JAEMVF]
79907
79817
-
Ser
TGA
[ENA]
¡û
>W2110447376
JAESIE010000002
Gammaproteobacteria
Marinobacter sp. JB05H06 [JAESIE]
577399
577489
+
Ser
TGA
[ENA]
¡û
>W2110654546
JAHVJU010000001
Gammaproteobacteria
Marinobacter salsuginis DP3N21-1 [JAHVJU]
591144
591054
-
Ser
TGA
[ENA]
¡û
>W2110660712
JAHXKI010000001
Gammaproteobacteria
Marinobacter sp. F4206 [JAHXKI]
275384
275294
-
Ser
TGA
[ENA]
¡û
>W2110661534
JAHXRN010000003
Gammaproteobacteria
Marinobacter adhaerens CS1 [JAHXRN]
253404
253494
+
Ser
TGA
[ENA]
¡û
>W2110691129
JAIOUO010000002
Gammaproteobacteria
Marinobacter sp. F4216 [JAIOUO]
843773
843863
+
Ser
TGA
[ENA]
¡û
>C211288778
CP071247
Gammaproteobacteria
Marinobacter sp. LPB0319 [CP071247]
2507726
2507816
+
Ser
TGA
-
¡û
>C241013381
AP028070
Gammaproteobacteria
Marinobacter sp. LA51 [AP028070]
1938234
1938144
-
Ser
TGA
-
¡û
>C241071410
CP043042
Gammaproteobacteria
Marinobacter fonticola CS412 [CP043042]
2061035
2061125
+
Ser
TGA
-
¡û
>C11113792
CP001978
Gammaproteobacteria
Marinobacter adhaerens HP15 [CP001978]
1878140
1878050
-
Ser
TGA
[Ensembl]
¡û
>W1610716680
LLXM01000010
Gammaproteobacteria
Marinobacter sp. P4B1 [LLXM]
244666
244756
+
Ser
TGA
[ENA]
¡û
>W1710560225
FONF01000011
Gammaproteobacteria
Marinobacter sp. DSM 26671 [FONF]
127815
127905
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK