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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.215831 (31 seq.)
>W1711124575
LUKH01000002
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
4652
4568
-
Leu
TAG
[ENA]
¡û
>W1711361432
MDLF01000001
Alphaproteobacteria
Rhodobacteraceae bacterium (ex Bugula neritina AB1) [MDLF]
66275
66359
+
Leu
TAG
[ENA]
¡û
>W1711572451
MNBW01000013
Alphaproteobacteria
Nioella nitratireducens [MNBW]
112787
112871
+
Leu
TAG
[ENA]
¡û
>WENV170635381
JDSF01008042
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
405
489
+
Leu
TAG
[ENA]
¡û
>WENV170962432
MRWF01015771
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
355
439
+
Leu
TAG
[ENA]
¡û
>WENV170963673
MRWG01000484
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
41442
41526
+
Leu
TAG
[ENA]
¡û
>W1910499685
FXYD01000001
Alphaproteobacteria
Octadecabacter ascidiaceicola CECT 8868 [FXYD]
676673
676589
-
Leu
TAG
[ENA]
¡û
>W1911539763
ONZF01000001
Alphaproteobacteria
Palleronia abyssalis CECT 8504 [ONZF]
147432
147348
-
Leu
TAG
[ENA]
¡û
>W1911638538
PVWS01000019
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
17209
17293
+
Leu
TAG
[ENA]
¡û
>W1810061265
PDNI01000052
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
3892
3808
-
Leu
TAG
[ENA]
¡û
>W1810658650
QJJL01000005
Alphaproteobacteria
Loktanella sp. PT4BL [QJJL]
156428
156512
+
Leu
TAG
[ENA]
¡û
>C151092054
CP012160
Alphaproteobacteria
Octadecabacter temperatus SB1 [CP012160]
1933435
1933351
-
Leu
TAG
-
¡û
>W2010419388
FXYD01000001
Alphaproteobacteria
Octadecabacter ascidiaceicola CECT 8868 [FXYD]
676673
676589
-
Leu
TAG
[ENA]
¡û
>W2011170038
ONZF01000001
Alphaproteobacteria
Palleronia abyssalis CECT 8504 [ONZF]
147432
147348
-
Leu
TAG
[ENA]
¡û
>W2011230264
PVWS01000019
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
17209
17293
+
Leu
TAG
[ENA]
¡û
>W2011961867
VANS01000001
Alphaproteobacteria
Sulfitobacter sp. HSMS-29 [VANS]
318097
318181
+
Leu
TAG
[ENA]
¡û
>W2011962206
VATA01000035
Alphaproteobacteria
Poseidonocella sp. HB161398 [VATA]
66988
67072
+
Leu
TAG
[ENA]
¡û
>W2110140433
JAAFZU010000055
Alphaproteobacteria
Loktanella sp. SALINAS62 [JAAFZU]
116800
116716
-
Leu
TAG
[ENA]
¡û
>W2110277210
JACVXA010000009
Alphaproteobacteria
Mangrovicoccus sp. HB182678 [JACVXA]
43439
43355
-
Leu
TAG
[ENA]
¡û
>W1510000298
AQQZ01000001
Alphaproteobacteria
Pseudaestuariivita atlantica 22II-S11-z3 [AQQZ]
424913
424997
+
Leu
TAG
[ENA]
¡û
>C231168710
CP081036
Alphaproteobacteria
Leisingera sp. M523 [CP081036]
1543536
1543620
+
Leu
TAG
-
¡û
>C231168766
CP081037
Alphaproteobacteria
Leisingera sp. M527 [CP081037]
1683435
1683519
+
Leu
TAG
-
¡û
>C231170003
CP081166
Alphaproteobacteria
Phaeobacter inhibens M619 [CP081166]
500678
500594
-
Leu
TAG
-
¡û
>C231181616
CP083546
Alphaproteobacteria
Leisingera sp. M658 [CP083546]
1743729
1743813
+
Leu
TAG
-
¡û
>W1610628521
LIGP01000001
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
1066900
1066816
-
Leu
TAG
[ENA]
¡û
>W1610641287
LJAL01000003
Alphaproteobacteria
Loktanella sp. 5RATIMAR09 [LJAL]
315673
315589
-
Leu
TAG
[ENA]
¡û
>W1610935547
LUKH01000002
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
4652
4568
-
Leu
TAG
[ENA]
¡û
>W1710015595
AQQU01000013
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
72164
72248
+
Leu
TAG
[ENA]
¡û
>W1710574852
FOYO01000001
Alphaproteobacteria
Litoreibacter janthinus [FOYO]
2751421
2751337
-
Leu
TAG
[ENA]
¡û
>W1710594940
FSRP01000001
Alphaproteobacteria
Octadecabacter temperatus [FSRP]
1617229
1617145
-
Leu
TAG
[ENA]
¡û
>W1710600108
FTPR01000001
Alphaproteobacteria
Yoonia rosea [FTPR]
1072348
1072264
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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