This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.215845 (18 seq.)
>W131160101
AQWH01000030
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
55137
55221
+
Leu
TAG
[ENA]
¡û
>C171105014
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
2766390
2766474
+
Leu
TAG
-
¡û
>W141180696
AYGY02000195
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
5875
5791
-
Leu
TAG
[ENA]
¡û
>WENV170441651
CEUV01251980
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
759
675
-
Leu
TAG
[ENA]
¡û
>WENV170788683
MDSV01037721
[MDSV] marine metagenome; seawater
15747
15831
+
Leu
TAG
[ENA]
¡û
>WENV170824219
MDSY01071994
[MDSY] marine metagenome; seawater
3187
3271
+
Leu
TAG
[ENA]
¡û
>WENV170890668
MDTD01013728
[MDTD] marine metagenome; seawater
1452
1536
+
Leu
TAG
[ENA]
¡û
>WENV170901315
MDTD01168459
[MDTD] marine metagenome; seawater
2132
2216
+
Leu
TAG
[ENA]
¡û
>W1810365558
PVUG01000001
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
100765
100681
-
Leu
TAG
[ENA]
¡û
>C151072521
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
2976168
2976252
+
Leu
TAG
[Ensembl]
¡û
>W2010636381
JABUOU010000001
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
248701
248785
+
Leu
TAG
[ENA]
¡û
>W2010725233
JACIDZ010000001
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
39210
39294
+
Leu
TAG
[ENA]
¡û
>W2011976146
VCLB01000005
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
369369
369453
+
Leu
TAG
[ENA]
¡û
>W2110513724
JAFLWW010000001
Alphaproteobacteria
Aminobacter anthyllidis LMG 26462 [JAFLWW]
400122
400038
-
Leu
TAG
[ENA]
¡û
>C211232413
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
1617452
1617536
+
Leu
TAG
-
¡û
>C241169442
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
3019394
3019310
-
Leu
TAG
-
¡û
>C241169467
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
3409351
3409435
+
Leu
TAG
-
¡û
>C161070359
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1366377
1366461
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK