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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.215846 (19 seq.)
>W131160079
AQWH01000004
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
127970
127886
-
Tyr
GTA
[ENA]
¡û
>C171105012
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
2544387
2544471
+
Tyr
GTA
-
¡û
>W141180682
AYGY02000146
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
3287
3371
+
Tyr
GTA
[ENA]
¡û
>WENV170499637
CEVT01181538
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
59
143
+
Tyr
GTA
[ENA]
¡û
>WENV170529099
CEWJ01102546
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
606
690
+
Tyr
GTA
[ENA]
¡û
>WENV170796271
MDSV01161873
[MDSV] marine metagenome; seawater
20785
20869
+
Tyr
GTA
[ENA]
¡û
>WENV170825307
MDSY01090756
[MDSY] marine metagenome; seawater
1708
1792
+
Tyr
GTA
[ENA]
¡û
>W1810365592
PVUG01000019
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
2915
2831
-
Tyr
GTA
[ENA]
¡û
>C151072539
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
4116662
4116578
-
Tyr
GTA
[Ensembl]
¡û
>W2010570164
JAATVV010000017
Alphaproteobacteria
Martelella sp. HB161492 [JAATVV]
6470
6386
-
Tyr
GTA
[ENA]
¡û
>W2010636420
JABUOU010000009
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
203966
204050
+
Tyr
GTA
[ENA]
¡û
>W2010725268
JACIDZ010000015
Alphaproteobacteria
Martelella radicis DSM 28101 [JACIDZ]
130222
130306
+
Tyr
GTA
[ENA]
¡û
>W2011627766
SMAR01000016
Alphaproteobacteria
Martelella mediterranea 175.2 [SMAR]
1864
1780
-
Tyr
GTA
[ENA]
¡û
>W2011976154
VCLB01000008
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
315525
315441
-
Tyr
GTA
[ENA]
¡û
>W2012031665
VHLG01000007
Alphaproteobacteria
Martelella sp. BGMRC2036 [VHLG]
219687
219771
+
Tyr
GTA
[ENA]
¡û
>C211232436
CP066786
Alphaproteobacteria
Martelella lutilitoris ZRK001 [CP066786]
2817885
2817801
-
Tyr
GTA
-
¡û
>C241169410
CP054858
Alphaproteobacteria
Martelella sp. NC18 [CP054858]
1903467
1903551
+
Tyr
GTA
-
¡û
>C241169478
CP054861
Alphaproteobacteria
Martelella sp. NC20 [CP054861]
4525355
4525271
-
Tyr
GTA
-
¡û
>C161070384
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
2667201
2667117
-
Tyr
GTA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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