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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.217219 (17 seq.)
>W131235294
AULL01000015
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
88062
87986
-
Arg
TCG
[ENA]
¡û
>WENV180038825
LLBY010007067
[LLBY] soil metagenome; soil from tomato rhizosphere
51079
51153
+
Arg
TCG
[ENA]
¡û
>WENV180041726
LLBZ010348143
[LLBZ] soil metagenome; soil from tomato rhizosphere
1425
1351
-
Arg
TCG
[ENA]
¡û
>WENV180285597
OBID01551471
[OBID] metagenome; sludge
201
127
-
Arg
TCG
[ENA]
¡û
>W141291554
JASZ01000342
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
7129
7053
-
Arg
TCG
[ENA]
¡û
>C191023117
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
739540
739466
-
Arg
TCG
-
¡û
>C191116466
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
2267289
2267363
+
Arg
TCG
-
¡û
>C191156045
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
36008
36082
+
Arg
TCG
-
¡û
>W1910923765
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
252205
252131
-
Arg
TCG
[ENA]
¡û
>W1810679242
QKPO01000006
Bacteroidota
Confluentibacter sediminis DSL-48 [QKPO]
216543
216617
+
Arg
TCG
[ENA]
¡û
>W1810788331
QREI01000001
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
332163
332089
-
Arg
TCG
[ENA]
¡û
>W2010970286
NIHE01000001
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
252205
252131
-
Arg
TCG
[ENA]
¡û
>W2011441454
RJTY01000020
Bacteroidota
Chryseobacterium haifense F4391 [RJTY]
60035
60109
+
Arg
TCG
[ENA]
¡û
>W2012355878
WJYA01000004
Bacteroidota
Winogradskyella sp. ZXX205 [WJYA]
509061
509137
+
Arg
TCG
[ENA]
¡û
>C211295976
CP071795
Bacteroidota
Polaribacter sp. G4M1 [CP071795]
1195856
1195782
-
Arg
TCG
-
¡û
>W2110716215
JAJAFT010000001
Bacteroidota
Kaistella anthropi CCUG 52764 [JAJAFT]
1539883
1539957
+
Arg
TCG
[ENA]
¡û
>C231287783
CP090976
Bacteroidota
Kaistella sp. 97-N-M2 [CP090976]
2493564
2493638
+
Arg
TCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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