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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.217284 (29 seq.)
>W131160023
AQWD01000211
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001004-K23 [AQWD]
60618
60542
-
Arg
TCT
[ENA]
¡û
>C171130497
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
154488
154564
+
Arg
TCT
-
¡û
>C010388
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
1193532
1193456
-
Arg
TCT
[Ensembl]
¡û
>WENV180035721
FTLB01001212
[FTLB] metagenome; soil
258
182
-
Arg
TCT
[ENA]
¡û
>WENV180040974
LLBZ010030759
[LLBZ] soil metagenome; soil from tomato rhizosphere
3925
3849
-
Arg
TCT
[ENA]
¡û
>WENV170559063
CXWL01108777
[CXWL] groundwater metagenome; biofilm material
10060
9985
-
Arg
TCT
[ENA]
¡û
>WENV170559355
CXWL01120185
[CXWL] groundwater metagenome; biofilm material
3258
3334
+
Arg
TCT
[ENA]
¡û
>WENV170559405
CXWL01121727
[CXWL] groundwater metagenome; biofilm material
3036
2960
-
Arg
TCT
[ENA]
¡û
>WENV170559507
CXWL01126339
[CXWL] groundwater metagenome; biofilm material
2262
2186
-
Arg
TCT
[ENA]
¡û
>WENV170559550
CXWL01128240
[CXWL] groundwater metagenome; biofilm material
93
17
-
Arg
TCT
[ENA]
¡û
>W1810062354
PDOB01000004
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
171551
171627
+
Arg
TCT
[ENA]
¡û
>W1810062444
PDOC01000015
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
107664
107588
-
Arg
TCT
[ENA]
¡û
>SRA1003127
SRR002326.226836
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
177
101
-
Arg
TCT
[SRA]
>SRA1004156
SRR002328.175931
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
152
76
-
Arg
TCT
[SRA]
>W1810297226
PTLZ01000002
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
427063
426987
-
Arg
TCT
[ENA]
¡û
>W1810387738
PXWF02000272
Betaproteobacteria
Massilia glaciei B448-2 [PXWF]
236
312
+
Arg
TCT
[ENA]
¡û
>C151100188
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
3486029
3485953
-
Arg
TCT
[Ensembl]
¡û
>W2011647615
SNWF01000005
Betaproteobacteria
Herminiimonas fonticola DSM 18555 [SNWF]
646393
646317
-
Arg
TCT
[ENA]
¡û
>W2012326398
WHJG01000008
Betaproteobacteria
Massilia sp. CCM 8695 [WHJG]
18179
18255
+
Arg
TCT
[ENA]
¡û
>W2110025596
BMHS01000005
Betaproteobacteria
Massilia psychrophila CGMCC 1.15196 [BMHS]
560
484
-
Arg
TCT
[ENA]
¡û
>C211199767
CP065053
Betaproteobacteria
Massilia sp. CCM 8941 [CP065053]
4493570
4493646
+
Arg
TCT
-
¡û
>C211377069
CP080378
Betaproteobacteria
Massilia sp. PAMC28688 [CP080378]
5350031
5349955
-
Arg
TCT
-
¡û
>C231247630
CP087970
Betaproteobacteria
Massilia sp. B-10 [CP087970]
457763
457687
-
Arg
TCT
-
¡û
>W1610070473
BCTH01000027
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
175440
175516
+
Arg
TCT
[ENA]
¡û
>W1610093135
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
3515583
3515659
+
Arg
TCT
[ENA]
¡û
>W1610753725
LNEU01000015
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
16940
16864
-
Arg
TCT
[ENA]
¡û
>W1710067846
BCTH01000027
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
175440
175516
+
Arg
TCT
[ENA]
¡û
>W1710096343
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
3515583
3515659
+
Arg
TCT
[ENA]
¡û
>W1710586007
FQWU01000002
Betaproteobacteria
Massilia sp. CF038 [FQWU]
427671
427595
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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