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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21732 (17 seq.)
>W141079129
ATLG01000012
Bacteroidota
Cellulophaga baltica 4 [ATLG]
216414
216502
+
Ser
GCT
[ENA]
¡û
>W141079162
ATLH01000013
Bacteroidota
Cellulophaga baltica 13 [ATLH]
237697
237785
+
Ser
GCT
[ENA]
¡û
>W141079197
ATLI01000012
Bacteroidota
Cellulophaga baltica 18 [ATLI]
300762
300850
+
Ser
GCT
[ENA]
¡û
>W141079230
ATLJ01000014
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
288420
288508
+
Ser
GCT
[ENA]
¡û
>WENV170672871
LAZR01002864
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
9012
9102
+
Ser
GCT
[ENA]
¡û
>C151061199
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
2685533
2685621
+
Ser
GCT
[Ensembl]
¡û
>C151062874
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
2732700
2732788
+
Ser
GCT
[Ensembl]
¡û
>W2012040416
VIQP01000003
Bacteroidota
Cellulophaga baltica 14 [VIQP]
202814
202726
-
Ser
GCT
[ENA]
¡û
>W2012435347
WTLE01000003
Bacteroidota
Cellulophaga sp. Z1A5H [WTLE]
442
354
-
Ser
GCT
[ENA]
¡û
>W2110371248
JADPRW010000051
Bacteroidota
Cellulophaga sp. E16_2 [JADPRW]
4461
4549
+
Ser
GCT
[ENA]
¡û
>C211118300
CP058989
Bacteroidota
Cellulophaga sp. HaHa_2_1 [CP058989]
4551853
4551941
+
Ser
GCT
-
¡û
>C231320458
CP092597
Bacteroidota
Cellulophaga baltica 4 [CP092597]
1396012
1395924
-
Ser
GCT
-
¡û
>C241114947
CP047027
Bacteroidota
Cellulophaga sp. L1A9 [CP047027]
3379050
3379138
+
Ser
GCT
-
¡û
>C11104720
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
3381135
3381223
+
Ser
GCT
[Ensembl]
¡û
>W1511320940
JQCT01000028
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
121446
121534
+
Ser
GCT
[ENA]
¡û
>W1511432839
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
1938188
1938098
-
Ser
GCT
[ENA]
¡û
>W1710514690
FNBD01000007
Bacteroidota
Cellulophaga baltica [FNBD]
223
135
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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