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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.217424 (81 seq.)
>W1710852897
LLWC01000024
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
147119
147043
-
Pro
GGG
[ENA]
¡û
>W1711334288
MBQF01000001
Alphaproteobacteria
Stappia indica [MBQF]
115967
115891
-
Pro
GGG
[ENA]
¡û
>W1711510448
MLAX01000006
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
356286
356210
-
Pro
GGG
[ENA]
¡û
>C171097435
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
276924
277000
+
Pro
GGG
-
¡û
>W131231508
AUIM01000004
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
136153
136077
-
Pro
GGG
[ENA]
¡û
>W141152924
AXCE01000006
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
71118
71042
-
Pro
GGG
[ENA]
¡û
>W141200791
AYYG01000101
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
58408
58332
-
Pro
GGG
[ENA]
¡û
>WENV170155541
CEOG01037805
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7028
6952
-
Pro
GGG
[ENA]
¡û
>WENV170201083
CEPP01071521
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
40
116
+
Pro
GGG
[ENA]
¡û
>WENV170469596
CEVF01128088
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
212
136
-
Pro
GGG
[ENA]
¡û
>WENV170652276
JRYH01000507
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
43612
43688
+
Pro
GGG
[ENA]
¡û
>WENV170728300
LULE01018265
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
512
436
-
Pro
GGG
[ENA]
¡û
>WENV170779772
LZQR01000417
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
4661
4737
+
Pro
GGG
[ENA]
¡û
>WENV170831754
MDSZ01049758
[MDSZ] marine metagenome; seawater
18110
18034
-
Pro
GGG
[ENA]
¡û
>WENV170889996
MDTD01003482
[MDTD] marine metagenome; seawater
37859
37783
-
Pro
GGG
[ENA]
¡û
>WENV170891281
MDTD01021887
[MDTD] marine metagenome; seawater
15642
15718
+
Pro
GGG
[ENA]
¡û
>WENV170928196
MDTG01129622
[MDTG] marine metagenome; seawater
93736
93812
+
Pro
GGG
[ENA]
¡û
>WENV170933065
MDTG01214691
[MDTG] marine metagenome; seawater
52857
52781
-
Pro
GGG
[ENA]
¡û
>C191188403
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
4672915
4672991
+
Pro
GGG
-
¡û
>W09118288
ACCU01000019
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
11425
11349
-
Pro
GGG
[ENA]
¡û
>W1910285126
FREW01000001
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
558348
558424
+
Pro
GGG
[ENA]
¡û
>W1910501828
FYAU01000036
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
100994
101070
+
Pro
GGG
[ENA]
¡û
>W1910501857
FYAV01000047
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
99043
99119
+
Pro
GGG
[ENA]
¡û
>W1910501903
FYAW01000017
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
302766
302690
-
Pro
GGG
[ENA]
¡û
>W1911494878
OBML01000004
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
298997
299073
+
Pro
GGG
[ENA]
¡û
>W1911532399
OGUZ01000014
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
19289
19213
-
Pro
GGG
[ENA]
¡û
>W2010395389
FREW01000001
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
558348
558424
+
Pro
GGG
[ENA]
¡û
>W2010421560
FYAU01000036
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
100994
101070
+
Pro
GGG
[ENA]
¡û
>W2010421589
FYAV01000047
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
99043
99119
+
Pro
GGG
[ENA]
¡û
>W2010421635
FYAW01000017
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
302766
302690
-
Pro
GGG
[ENA]
¡û
>W2010583055
JAAZTM010000020
Alphaproteobacteria
Labrenzia sp. 5N [JAAZTM]
1068877
1068953
+
Pro
GGG
[ENA]
¡û
>W2010612785
JABRXF010000002
Alphaproteobacteria
Rhizobiales bacterium SY4-7 [JABRXF]
164011
163935
-
Pro
GGG
[ENA]
¡û
>W2010684009
JACEON010000001
Alphaproteobacteria
Stappia taiwanensis DSM 23284 [JACEON]
252048
251972
-
Pro
GGG
[ENA]
¡û
>W2010752329
JACMIA010000001
Alphaproteobacteria
Stappia sp. 28M-7 [JACMIA]
2254090
2254014
-
Pro
GGG
[ENA]
¡û
>W2011155782
OBML01000004
Alphaproteobacteria
Stappia indica USBA 352 [OBML]
298997
299073
+
Pro
GGG
[ENA]
¡û
>W2011165158
OGUZ01000014
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
19289
19213
-
Pro
GGG
[ENA]
¡û
>W2011354595
RAPU01000001
Alphaproteobacteria
Stappia sp. ARW1T [RAPU]
1468986
1469062
+
Pro
GGG
[ENA]
¡û
>W2011637728
SMLY01000087
Alphaproteobacteria
Roseibium hamelinense NBRC 16783 [SMLY]
648576
648652
+
Pro
GGG
[ENA]
¡û
>W2011638024
SMMF01000747
Alphaproteobacteria
Roseibium sp. RKSG952 [SMMF]
186
110
-
Pro
GGG
[ENA]
¡û
>W2012041294
VIRG01000066
Alphaproteobacteria
Stappia sp. BW2 [VIRG]
223188
223264
+
Pro
GGG
[ENA]
¡û
>W2012098818
VNWM01000002
Alphaproteobacteria
Sneathiella aquimaris 216LB-ZA1-12 [VNWM]
555603
555679
+
Pro
GGG
[ENA]
¡û
>W2012098875
VNWN01000007
Alphaproteobacteria
Sneathiella chinensis LMG23452 [VNWN]
358101
358025
-
Pro
GGG
[ENA]
¡û
>W2012098907
VNWO01000007
Alphaproteobacteria
Sneathiella chungangensis KCTC32476 [VNWO]
164750
164826
+
Pro
GGG
[ENA]
¡û
>W2012205348
VXDB01000004
Alphaproteobacteria
Roseibium sediminis KCTC 52373 [VXDB]
123093
123017
-
Pro
GGG
[ENA]
¡û
>W2012205415
VXDC01000009
Alphaproteobacteria
Roseibium aquae CGMCC 1.12426 [VXDC]
190004
190080
+
Pro
GGG
[ENA]
¡û
>W2012226983
WAJT01000001
Alphaproteobacteria
Labrenzia sp. CE80 [WAJT]
1878310
1878386
+
Pro
GGG
[ENA]
¡û
>W2012437478
WTUW01000002
Alphaproteobacteria
Sneathiella sp. DP05 [WTUW]
832685
832609
-
Pro
GGG
[ENA]
¡û
>W2110022142
BMFA01000008
Alphaproteobacteria
Roseibium aquae CGMCC 1.12426 [BMFA]
190003
190079
+
Pro
GGG
[ENA]
¡û
>W2110292775
JACYXJ010000001
Alphaproteobacteria
Roseibium polysiphoniae KACC 19711 [JACYXJ]
500261
500185
-
Pro
GGG
[ENA]
¡û
>W2110363068
JADOUI010000008
Alphaproteobacteria
Labrenzia sp. EL_132 [JADOUI]
114381
114457
+
Pro
GGG
[ENA]
¡û
>W2110363153
JADOUK010000002
Alphaproteobacteria
Labrenzia sp. EL_162 [JADOUK]
136195
136119
-
Pro
GGG
[ENA]
¡û
>W2110363186
JADOUL010000001
Alphaproteobacteria
Labrenzia sp. EL_195 [JADOUL]
680758
680682
-
Pro
GGG
[ENA]
¡û
>W2110363265
JADOUN010000001
Alphaproteobacteria
Labrenzia sp. EL_126 [JADOUN]
557718
557794
+
Pro
GGG
[ENA]
¡û
>W2110363327
JADOUO010000002
Alphaproteobacteria
Labrenzia sp. EL_159 [JADOUO]
136195
136119
-
Pro
GGG
[ENA]
¡û
>W2110363380
JADOUP010000008
Alphaproteobacteria
Labrenzia sp. EL_208 [JADOUP]
114381
114457
+
Pro
GGG
[ENA]
¡û
>W2110363416
JADOUQ010000002
Alphaproteobacteria
Labrenzia sp. EL_13 [JADOUQ]
878780
878856
+
Pro
GGG
[ENA]
¡û
>W2110511708
JAFLNF010000005
Alphaproteobacteria
Roseibium sp. CAU 1637 [JAFLNF]
83453
83377
-
Pro
GGG
[ENA]
¡û
>W2110548123
JAGHRI010000001
Alphaproteobacteria
Labrenzia sp. R4_1 [JAGHRI]
1843878
1843802
-
Pro
GGG
[ENA]
¡û
>C231052965
CP045627
Alphaproteobacteria
Roseibium aggregatum ZYF703 [CP045627]
4309354
4309430
+
Pro
GGG
-
¡û
>C231543096
CP112881
Alphaproteobacteria
Sneathiella aquimaris 216LB-ZA1-12 [CP112881]
1535040
1535116
+
Pro
GGG
-
¡û
>C241095287
CP045354
Alphaproteobacteria
Labrenzia sp. THAF82 [CP045354]
4312415
4312491
+
Pro
GGG
-
¡û
>C241095713
CP045380
Alphaproteobacteria
Labrenzia sp. THAF35 [CP045380]
5253148
5253224
+
Pro
GGG
-
¡û
>C241114102
CP046908
Alphaproteobacteria
Stappia indica PHM037 [CP046908]
114065
113989
-
Pro
GGG
-
¡û
>C241285206
CP128601
Alphaproteobacteria
Roseibium aggregatum S1616 [CP128601]
4067889
4067965
+
Pro
GGG
-
¡û
>W2310023926
BSNF01000008
Alphaproteobacteria
Sneathiella chinensis NBRC 103408 [BSNF]
882503
882427
-
Pro
GGG
[ENA]
¡û
>C161037925
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
3879637
3879713
+
Pro
GGG
-
¡û
>W1610091997
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
70959
70883
-
Pro
GGG
[ENA]
¡û
>W1610092079
CXTY01000014
Alphaproteobacteria
Roseibium album alba [CXTY]
555242
555318
+
Pro
GGG
[ENA]
¡û
>W1610092135
CXWA01000008
Alphaproteobacteria
Roseibium album alba [CXWA]
305154
305230
+
Pro
GGG
[ENA]
¡û
>W1610092182
CXWC01000012
Alphaproteobacteria
Roseibium album alba [CXWC]
68064
67988
-
Pro
GGG
[ENA]
¡û
>W1610540315
JSEP01000032
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
11825
11749
-
Pro
GGG
[ENA]
¡û
>W1610716036
LLWC01000024
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
147119
147043
-
Pro
GGG
[ENA]
¡û
>W1610716109
LLWE01000039
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
9569
9493
-
Pro
GGG
[ENA]
¡û
>W1611066255
MBQF01000001
Alphaproteobacteria
Stappia indica [MBQF]
115967
115891
-
Pro
GGG
[ENA]
¡û
>W1710095354
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
70959
70883
-
Pro
GGG
[ENA]
¡û
>W1710095436
CXTY01000014
Alphaproteobacteria
Roseibium album alba [CXTY]
555242
555318
+
Pro
GGG
[ENA]
¡û
>W1710095492
CXWA01000008
Alphaproteobacteria
Roseibium album alba [CXWA]
305154
305230
+
Pro
GGG
[ENA]
¡û
>W1710095539
CXWC01000012
Alphaproteobacteria
Roseibium album alba [CXWC]
68064
67988
-
Pro
GGG
[ENA]
¡û
>W1710591630
FRBW01000001
Alphaproteobacteria
Roseibium suaedae [FRBW]
1451881
1451805
-
Pro
GGG
[ENA]
¡û
>W1710643336
JSEP01000032
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
11825
11749
-
Pro
GGG
[ENA]
¡û
>W1710660250
JXMT01000004
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
49732
49656
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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