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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218464 (10 seq.)
>W1711404422
MFYK01000013
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
52759
52835
+
Asp
GTC
[ENA]
¡û
>W1711404551
MFYN01000058
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
16009
16085
+
Asp
GTC
[ENA]
¡û
>WENV170215986
CEPX01186983
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5950
6026
+
Asp
GTC
[ENA]
¢þ
>W1910716928
MFXO01000014
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_49_38 [MFXO]
12717
12641
-
Asp
GTC
[ENA]
¡û
>W1910717135
MFXT01000025
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_49_16 [MFXT]
12717
12641
-
Asp
GTC
[ENA]
¡û
>C161050450
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
1172972
1172896
-
Asp
GTC
-
¡û
>C161050494
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
1173127
1173051
-
Asp
GTC
-
¡û
>C161050538
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
1173058
1172982
-
Asp
GTC
-
¡û
>C161050582
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
1172851
1172775
-
Asp
GTC
-
¡û
>C161050626
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
1173126
1173050
-
Asp
GTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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