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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218566 (12 seq.)
>WENV180095007
MTBK01043389
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
253
169
-
Leu
CAG
[ENA]
¡û
>WENV170010643
APMI01023547
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9064
9148
+
Leu
CAG
[ENA]
¡û
>C181044807
CP020470
Alphaproteobacteria
Fuscovulum blasticum 28/5 [CP020470]
2426941
2426857
-
Leu
CAG
-
¡û
>W1810195536
PKRQ01000001
Alphaproteobacteria
Tabrizicola sp. TH137 [PKRQ]
1041742
1041658
-
Leu
CAG
[ENA]
¡û
>W1810444930
PZKE01000001
Alphaproteobacteria
Fuscovulum blasticum DSM 2131 [PZKE]
42852
42936
+
Leu
CAG
[ENA]
¡û
>W1810707385
QNHG01000002
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
956738
956654
-
Leu
CAG
[ENA]
¡û
>W2010488756
JAAIVJ010000003
Alphaproteobacteria
Rhodobacteraceae bacterium KMS-5 [JAAIVJ]
72804
72888
+
Leu
CAG
[ENA]
¡û
>W2010493076
JAAKGP010000009
Alphaproteobacteria
Rhodobacter sp. SGA-6-6 [JAAKGP]
98005
97921
-
Leu
CAG
[ENA]
¡û
>W2010520695
JAANHS010000002
Alphaproteobacteria
Rhodobacter sp. M37P [JAANHS]
280678
280762
+
Leu
CAG
[ENA]
¡û
>W2012088754
VMDU01000002
Alphaproteobacteria
Rhodobacter sp. SYSU G03088 [VMDU]
320670
320754
+
Leu
CAG
[ENA]
¡û
>W2110668838
JAICBZ010000022
Alphaproteobacteria
Xinfangfangia sp. Clo-40 [JAICBZ]
14659
14575
-
Leu
CAG
[ENA]
¡û
>C241253132
CP124535
Alphaproteobacteria
Fuscovulum ytuae YMD61 [CP124535]
2574743
2574827
+
Leu
CAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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