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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218977 (105 seq.)
>W1711128591
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
89124
89207
+
Leu
TAG
[ENA]
¡û
>W1711308438
MAPZ01000011
Bacillota
Clostridium paraputrificum [MAPZ]
206195
206112
-
Leu
TAG
[ENA]
¡û
>W1711462052
MJHL01000006
Bacillota
Clostridium baratii [MJHL]
3070
2987
-
Leu
TAG
[ENA]
¡û
>W1711462128
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
3297
3214
-
Leu
TAG
[ENA]
¡û
>W1711462253
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
3262
3179
-
Leu
TAG
[ENA]
¡û
>W131232246
AUJC01000001
Bacillota
Clostridium paraputrificum AGR2156 [AUJC]
637245
637162
-
Leu
TAG
[ENA]
¡û
>C171030641
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1452365
1452282
-
Leu
TAG
-
¡û
>WENV180159967
OAVB01036106
[OAVB] human gut metagenome; faeces
299
382
+
Leu
TAG
[ENA]
¢þ
>WENV180276320
OBHU01011257
[OBHU] human gut metagenome; feces
1449
1366
-
Leu
TAG
[ENA]
¢þ
>WENV180341975
OBLI01321910
[OBLI] pig gut metagenome; faeces
200
117
-
Leu
TAG
[ENA]
¢þ
>WENV180477889
OBYZ01032342
[OBYZ] human gut metagenome; faeces
85
2
-
Leu
TAG
[ENA]
¢þ
>WENV180486228
OBZL01000049
[OBZL] human gut metagenome; faeces
25870
25787
-
Leu
TAG
[ENA]
¢þ
>WENV180942197
ODTZ01057782
[ODTZ] human metagenome; G_DNA_Stool
233
316
+
Leu
TAG
[ENA]
¢þ
>WENV181219390
OFCO01000714
[OFCO] metagenome; Human gut stool
3712
3795
+
Leu
TAG
[ENA]
¢þ
>WENV181220348
OFCQ01001946
[OFCQ] metagenome; Human gut stool
693
610
-
Leu
TAG
[ENA]
¢þ
>WENV181220592
OFCR01000895
[OFCR] metagenome; Human gut stool
2406
2489
+
Leu
TAG
[ENA]
¢þ
>WENV181221548
OFCV01004711
[OFCV] metagenome; Human gut stool
533
616
+
Leu
TAG
[ENA]
¢þ
>WENV181225926
OFDJ01001897
[OFDJ] metagenome; Human gut stool
2317
2400
+
Leu
TAG
[ENA]
¢þ
>WENV181741140
OGQJ01072394
[OGQJ] human gut metagenome; faeces
222
139
-
Leu
TAG
[ENA]
¢þ
>WENV181798779
OGRX01000249
[OGRX] human gut metagenome; fecal sample 2 from infant 8
79
162
+
Leu
TAG
[ENA]
¢þ
>WENV181801936
OGSC01000422
[OGSC] human gut metagenome; fecal sample 8 from infant 5
85
168
+
Leu
TAG
[ENA]
¢þ
>WENV181804368
OGSF01000167
[OGSF] human gut metagenome; fecal sample 3 from infant 5
63
146
+
Leu
TAG
[ENA]
¢þ
>WENV181805036
OGSH01000331
[OGSH] human gut metagenome; fecal sample 5 from infant 6
30235
30152
-
Leu
TAG
[ENA]
¢þ
>WENV181805333
OGSI01000091
[OGSI] human gut metagenome; fecal sample 4 from infant 8
29761
29844
+
Leu
TAG
[ENA]
¢þ
>WENV181805750
OGSJ01000398
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
113
196
+
Leu
TAG
[ENA]
¢þ
>WENV181806134
OGSK01000075
[OGSK] human gut metagenome; fecal sample 2 from infant 5
27068
27151
+
Leu
TAG
[ENA]
¢þ
>WENV181807271
OGSO01000049
[OGSO] human gut metagenome; fecal sample 3 from infant 6
27109
27192
+
Leu
TAG
[ENA]
¢þ
>WENV181808196
OGSR01000125
[OGSR] human gut metagenome; fecal sample 8 from infant 2
30492
30409
-
Leu
TAG
[ENA]
¢þ
>WENV181809458
OGST01000227
[OGST] human gut metagenome; fecal sample 7 from infant 6
20598
20515
-
Leu
TAG
[ENA]
¢þ
>WENV181810011
OGSU01000329
[OGSU] human gut metagenome; fecal sample 7 from infant 5
55
138
+
Leu
TAG
[ENA]
¢þ
>WENV181810945
OGSX01000083
[OGSX] human gut metagenome; fecal sample 1 from infant 8
33070
33153
+
Leu
TAG
[ENA]
¢þ
>WENV181811180
OGSY01000129
[OGSY] human gut metagenome; fecal sample 5 from infant 8
27093
27176
+
Leu
TAG
[ENA]
¢þ
>WENV181811620
OGSZ01000088
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
27191
27108
-
Leu
TAG
[ENA]
¢þ
>WENV181814760
OGTH01000229
[OGTH] human gut metagenome; fecal sample 4 from infant 6
30235
30152
-
Leu
TAG
[ENA]
¢þ
>WENV181821260
OGUE01000170
[OGUE] human gut metagenome; fecal sample 1 from infant 5
107
190
+
Leu
TAG
[ENA]
¢þ
>WENV181826352
OGUL01011783
[OGUL] human gut metagenome; faeces
2126
2209
+
Leu
TAG
[ENA]
¢þ
>WENV182407420
OIFD01000013
[OIFD] human gut metagenome; stool
81789
81872
+
Leu
TAG
[ENA]
¢þ
>WENV182409634
OIFJ01000064
[OIFJ] human gut metagenome; stool
59438
59355
-
Leu
TAG
[ENA]
¢þ
>WENV182410067
OIFK01000029
[OIFK] human gut metagenome; stool
72116
72033
-
Leu
TAG
[ENA]
¢þ
>WENV182410791
OIFM01000041
[OIFM] human gut metagenome; stool
39269
39186
-
Leu
TAG
[ENA]
¢þ
>WENV182411720
OIFQ01000011
[OIFQ] human gut metagenome; stool
185379
185296
-
Leu
TAG
[ENA]
¢þ
>WENV182596386
OJIY01019066
[OJIY] metagenome; faeces
203
286
+
Leu
TAG
[ENA]
¢þ
>W141265342
CCFF01000015
Bacillota
Clostridium culturomicium CL-6 [CCFF]
524210
524127
-
Leu
TAG
[ENA]
¡û
>W141265372
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
115659
115576
-
Leu
TAG
[ENA]
¡û
>W141265379
CCFF01000016
Bacillota
Clostridium culturomicium CL-6 [CCFF]
115060
114977
-
Leu
TAG
[ENA]
¡û
>W141265391
CCFF01000017
Bacillota
Clostridium culturomicium CL-6 [CCFF]
473524
473607
+
Leu
TAG
[ENA]
¡û
>WENV182807464
OJVW01005112
[OJVW] human gut metagenome; human gut
666
583
-
Leu
TAG
[ENA]
¢þ
>WENV182808742
OJWI01001181
[OJWI] human gut metagenome; human gut
2786
2869
+
Leu
TAG
[ENA]
¢þ
>WENV182827634
OKDB01001176
[OKDB] human gut metagenome; human gut
328
245
-
Leu
TAG
[ENA]
¢þ
>WENV182832969
OKEP01004906
[OKEP] human gut metagenome; human gut
762
679
-
Leu
TAG
[ENA]
¢þ
>WENV182840240
OKHK01004366
[OKHK] human gut metagenome; human gut
38
121
+
Leu
TAG
[ENA]
¢þ
>WENV182855774
OKNE01000535
[OKNE] human gut metagenome; human gut
596
513
-
Leu
TAG
[ENA]
¢þ
>WENV182856594
OKNP01000070
[OKNP] human gut metagenome; human gut
712
629
-
Leu
TAG
[ENA]
¢þ
>WENV182865067
OKQH01002894
[OKQH] human gut metagenome; human gut
477
394
-
Leu
TAG
[ENA]
¢þ
>WENV182950279
OKVR01001850
[OKVR] human gut metagenome; human gut
811
728
-
Leu
TAG
[ENA]
¢þ
>WENV182954792
OKWB01000013
[OKWB] human gut metagenome; stool
81789
81872
+
Leu
TAG
[ENA]
¢þ
>WENV182958856
OKWI01000014
[OKWI] human gut metagenome; stool
187221
187138
-
Leu
TAG
[ENA]
¢þ
>WENV182960916
OKWK01000050
[OKWK] human gut metagenome; stool
80961
81044
+
Leu
TAG
[ENA]
¢þ
>WENV182961740
OKWL01000230
[OKWL] human gut metagenome; stool
20142
20059
-
Leu
TAG
[ENA]
¢þ
>WENV182962122
OKWN01000038
[OKWN] human gut metagenome; stool
82907
82824
-
Leu
TAG
[ENA]
¢þ
>WENV182962655
OKWO01000012
[OKWO] human gut metagenome; stool
185379
185296
-
Leu
TAG
[ENA]
¢þ
>WENV182963245
OKWQ01000010
[OKWQ] human gut metagenome; stool
41765
41848
+
Leu
TAG
[ENA]
¢þ
>WENV182963252
OKWQ01000021
[OKWQ] human gut metagenome; stool
92785
92868
+
Leu
TAG
[ENA]
¢þ
>WENV182965625
OKWT01000010
[OKWT] human gut metagenome; stool
186812
186729
-
Leu
TAG
[ENA]
¢þ
>WENV182967152
OKWZ01000030
[OKWZ] human gut metagenome; stool
59180
59097
-
Leu
TAG
[ENA]
¢þ
>WENV183087253
OLJG01000466
[OLJG] human gut metagenome; human gut
557
474
-
Leu
TAG
[ENA]
¢þ
>WENV183390961
OLZC01010535
[OLZC] human gut metagenome; feces
123
40
-
Leu
TAG
[ENA]
¢þ
>WENV183409735
OMAG01006119
[OMAG] human gut metagenome; feces
2378
2295
-
Leu
TAG
[ENA]
¢þ
>WENV183458520
OMDM01021696
[OMDM] human gut metagenome; feces
314
397
+
Leu
TAG
[ENA]
¢þ
>WENV183517795
OMNP01014527
[OMNP] human gut metagenome; feces
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV170655477
JTFN01036051
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
391
308
-
Leu
TAG
[ENA]
¢þ
>C181136110
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
667324
667407
+
Leu
TAG
-
¡û
>C181136119
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
668199
668282
+
Leu
TAG
-
¡û
>C181136129
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
669141
669224
+
Leu
TAG
-
¡û
>C191222067
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
736131
736214
+
Leu
TAG
-
¡û
>C191222076
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
736985
737068
+
Leu
TAG
-
¡û
>C191222085
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
737839
737922
+
Leu
TAG
-
¡û
>W141702250
JMLJ01000008
Bacillota
Clostridium hydrogeniformans DSM 21757 [JMLJ]
194589
194672
+
Leu
TAG
[ENA]
¡û
>W141806520
JPMD01000070
Bacillota
Clostridium sulfidigenes [JPMD]
505
588
+
Leu
TAG
[ENA]
¡û
>W1911491720
OAOI01000062
Bacillota
Clostridium thiosulfatireducens [OAOI]
1693
1610
-
Leu
TAG
[ENA]
¡û
>W1911493580
OBIP01000002
Bacillota
Clostridium paraputrificum LH141 [OBIP]
100456
100539
+
Leu
TAG
[ENA]
¡û
>W1911493683
OBIQ01000010
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
96172
96255
+
Leu
TAG
[ENA]
¡û
>W1911493834
OBJN01000004
Bacillota
Clostridium paraputrificum LH025 [OBJN]
100443
100526
+
Leu
TAG
[ENA]
¡û
>W1810604834
QGMT01000006
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
104159
104242
+
Leu
TAG
[ENA]
¡û
>C151014216
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1629946
1630029
+
Leu
TAG
[Ensembl]
¡û
>W1510060586
CCXK01000015
Bacillota
Clostridium culturomicium CL-6 [CCXK]
524210
524127
-
Leu
TAG
[ENA]
¡û
>W1510060616
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
115659
115576
-
Leu
TAG
[ENA]
¡û
>W1510060623
CCXK01000016
Bacillota
Clostridium culturomicium CL-6 [CCXK]
115060
114977
-
Leu
TAG
[ENA]
¡û
>W1510060635
CCXK01000017
Bacillota
Clostridium culturomicium CL-6 [CCXK]
473524
473607
+
Leu
TAG
[ENA]
¡û
>W1511445747
JUWA01000158
Bacillota
Clostridium botulinum 713_CBOT [JUWA]
7712
7629
-
Leu
TAG
[ENA]
¡û
>W1511551783
JZTY01000036
Bacillota
Clostridium baratii 771-14 [JZTY]
23
106
+
Leu
TAG
[ENA]
¡û
>W1610101673
CYZW01000007
Bacillota
Clostridium paraputrificum [CYZW]
117671
117588
-
Leu
TAG
[ENA]
¡û
>W1610103149
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
17696
17613
-
Leu
TAG
[ENA]
¡û
>W1610104261
CZBO01000029
Bacillota
Clostridium baratii [CZBO]
173
90
-
Leu
TAG
[ENA]
¡û
>W1610104339
CZBQ01000013
Bacillota
Clostridium paraputrificum [CZBQ]
43533
43450
-
Leu
TAG
[ENA]
¡û
>W1610616847
LGRR01000018
Bacillota
Clostridium baratii [LGRR]
332
415
+
Leu
TAG
[ENA]
¡û
>W1611056097
MAPZ01000011
Bacillota
Clostridium paraputrificum [MAPZ]
206195
206112
-
Leu
TAG
[ENA]
¡û
>W1710104428
CYZW01000007
Bacillota
Clostridium paraputrificum [CYZW]
117671
117588
-
Leu
TAG
[ENA]
¡û
>W1710105904
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
17696
17613
-
Leu
TAG
[ENA]
¡û
>W1710106965
CZBO01000029
Bacillota
Clostridium baratii [CZBO]
173
90
-
Leu
TAG
[ENA]
¡û
>W1710107043
CZBQ01000013
Bacillota
Clostridium paraputrificum [CZBQ]
43533
43450
-
Leu
TAG
[ENA]
¡û
>W1710578912
FPBY01000087
Bacillota
Clostridium sp. DSM 8431 [FPBY]
12
95
+
Leu
TAG
[ENA]
¡û
>W1710578926
FPBY01000177
Bacillota
Clostridium sp. DSM 8431 [FPBY]
6742
6825
+
Leu
TAG
[ENA]
¡û
>W1710586984
FQXP01000019
Bacillota
Clostridium collagenovorans DSM 3089 [FQXP]
69
152
+
Leu
TAG
[ENA]
¡û
>W1710742186
LGRR01000018
Bacillota
Clostridium baratii [LGRR]
332
415
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK