This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219464 (32 seq.)
>A171000214
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1278056
1277980
-
Ala
TGC
-
¡û
>A171000491
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1948831
1948755
-
Ala
TGC
-
¡û
>A171002578
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1625535
1625611
+
Ala
TGC
-
¡û
>A171003315
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1282403
1282479
+
Ala
TGC
-
¡û
>A171004214
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
944052
944128
+
Ala
TGC
-
¡û
>A171004274
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1094610
1094686
+
Ala
TGC
-
¡û
>A171006607
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
783525
783449
-
Ala
TGC
-
¡û
>A171006675
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
463968
463892
-
Ala
TGC
-
¡û
>A171007104
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1419235
1419311
+
Ala
TGC
-
¡û
>At1937
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
2024406
2024482
+
Ala
TGC
[Ensembl]
¡û
>W1910230005
FOIW01000003
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
77775
77699
-
Ala
TGC
[ENA]
¡û
>W1610045074
BBBB01000003
Euryarchaeota
Thermococcus celer JCM 8558 [BBBB]
87682
87758
+
Ala
TGC
[ENA]
¡û
>W1610046835
BBCU01000019
Euryarchaeota
Thermococcus sp. JCM 11816 [BBCU]
626
702
+
Ala
TGC
[ENA]
¡û
>W1610638218
LIXN01000002
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
176745
176821
+
Ala
TGC
[ENA]
¡û
>ENV001417
AY878122
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001418
AY878123
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001419
AY878124
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001421
AY878126
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001422
AY878127
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001423
AY878128
Environmental sample from ENV division of INSDC
53
131
+
Ala
TGC
[ENA]
>ENV001424
AY878129
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001425
AY878130
Environmental sample from ENV division of INSDC
51
129
+
Ala
TGC
[ENA]
>ENV001426
AY878131
Environmental sample from ENV division of INSDC
51
129
+
Ala
TGC
[ENA]
>ENV001427
AY878132
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001428
AY878133
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001429
AY878134
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001430
AY878135
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001431
AY878136
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001432
AY878137
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001433
AY878138
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001442
AY878147
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
>ENV001444
AY878149
Environmental sample from ENV division of INSDC
52
130
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK