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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219479 (85 seq.)
>W1711082126
LSTQ01000007
Actinomycetota
Corynebacterium stationis [LSTQ]
18828
18752
-
Met
CAT
[ENA]
¡û
>W1711095154
LTGO01000007
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
28460
28386
-
Met
CAT
[ENA]
¡û
>W1711096586
LTHX01000014
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
26790
26864
+
Met
CAT
[ENA]
¡û
>W1711097658
LTIW01000064
Actinomycetota
Corynebacterium sp. HMSC058E07 [LTIW]
2381
2307
-
Met
CAT
[ENA]
¡û
>W1711105923
LTRH01000034
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
20603
20527
-
Met
CAT
[ENA]
¡û
>W1711106540
LTRY01000026
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
877
801
-
Met
CAT
[ENA]
¡û
>W1711107227
LTSO01000079
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
14116
14190
+
Met
CAT
[ENA]
¡û
>W1711108815
LTUC01000008
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
2654
2728
+
Met
CAT
[ENA]
¡û
>W1711185913
LWNU01000010
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
74141
74065
-
Met
CAT
[ENA]
¡û
>W1711186044
LWNW01000041
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
928
1004
+
Met
CAT
[ENA]
¡û
>W1711186751
LWOM01000011
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
16079
16155
+
Met
CAT
[ENA]
¡û
>W1711186898
LWOP01000020
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
13362
13438
+
Met
CAT
[ENA]
¡û
>W1711510243
MLAL01000015
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
27715
27791
+
Met
CAT
[ENA]
¡û
>W1711511754
MLCR01000015
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
28015
27939
-
Met
CAT
[ENA]
¡û
>W1711517383
MLJM01000041
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
44952
45026
+
Met
CAT
[ENA]
¡û
>W131159251
AQUX01000001
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
232800
232876
+
Met
CAT
[ENA]
¡û
>W131159321
AQUY01000002
Actinomycetota
Corynebacterium ulceribovis DSM 45146 [AQUY]
351744
351820
+
Met
CAT
[ENA]
¡û
>W131221642
AUAQ01000011
Actinomycetota
Corynebacterium freiburgense DSM 45254 [AUAQ]
435273
435349
+
Met
CAT
[ENA]
¡û
>W131251650
CAVS020000020
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
13222
13298
+
Met
CAT
[ENA]
¡û
>C171001820
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
962972
963048
+
Met
CAT
-
¡û
>C171002126
CP009251
Actinomycetota
Corynebacterium stationis 622 [CP009251]
919727
919803
+
Met
CAT
-
¡û
>C171098503
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
1049565
1049641
+
Met
CAT
-
¡û
>C171101832
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
768022
768098
+
Met
CAT
-
¡û
>W141008897
AHAE01000023
Actinomycetota
Corynebacterium otitidis ATCC 51513 [AHAE]
17238
17162
-
Met
CAT
[ENA]
¡û
>WENV181212249
OFBN01001171
[OFBN] metagenome; hydrothermal vent
212
138
-
Ile2
CAT
[ENA]
¢þ
>WENV181212398
OFBP01000755
[OFBP] metagenome; hydrothermal vent
960
1034
+
Ile2
CAT
[ENA]
¢þ
>WENV181212480
OFBQ01000767
[OFBQ] metagenome; hydrothermal vent
960
1034
+
Ile2
CAT
[ENA]
¢þ
>WENV181212556
OFBR01000778
[OFBR] metagenome; hydrothermal vent
1003
1077
+
Ile2
CAT
[ENA]
¢þ
>WENV181212622
OFBS01000376
[OFBS] metagenome; hydrothermal vent
660
586
-
Ile2
CAT
[ENA]
¢þ
>WENV181212720
OFBT01000945
[OFBT] metagenome; hydrothermal vent
1003
1077
+
Ile2
CAT
[ENA]
¢þ
>W141243538
CAJP01000004
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
17598
17672
+
Met
CAT
[ENA]
¡û
>W141243939
CAJZ01000021
Actinomycetota
Corynebacterium otitidis ATCC 51513 [CAJZ]
1351
1427
+
Met
CAT
[ENA]
¡û
>WENV182629168
OJKR01014287
[OJKR] metagenome; surface
434
360
-
Ile2
CAT
[ENA]
¢þ
>WENV182641860
OJLK01004549
[OJLK] metagenome; surface
799
725
-
Ile2
CAT
[ENA]
¢þ
>WENV182643864
OJLW01001904
[OJLW] metagenome; surface
345
271
-
Ile2
CAT
[ENA]
¢þ
>WENV182645536
OJLY01044077
[OJLY] metagenome; surface
84
10
-
Ile2
CAT
[ENA]
¢þ
>WENV182671917
OJNM01010359
[OJNM] metagenome; surface
1052
978
-
Ile2
CAT
[ENA]
¢þ
>W141453021
JFCI01000034
Actinomycetota
Corynebacterium jeikeium [JFCI]
1756
1830
+
Met
CAT
[ENA]
¡û
>W141453050
JFCJ01000064
Actinomycetota
Corynebacterium jeikeium [JFCJ]
60593
60519
-
Met
CAT
[ENA]
¡û
>W141453113
JFCK01000259
Actinomycetota
Corynebacterium jeikeium [JFCK]
3886
3812
-
Met
CAT
[ENA]
¡û
>W141453150
JFCL01000027
Actinomycetota
Corynebacterium jeikeium [JFCL]
43292
43218
-
Met
CAT
[ENA]
¡û
>W141453244
JFCN01000043
Actinomycetota
Corynebacterium jeikeium [JFCN]
29354
29278
-
Met
CAT
[ENA]
¡û
>W141453330
JFCP01000014
Actinomycetota
Corynebacterium jeikeium [JFCP]
112918
112992
+
Met
CAT
[ENA]
¡û
>W141453376
JFCQ01000009
Actinomycetota
Corynebacterium jeikeium [JFCQ]
1567
1641
+
Met
CAT
[ENA]
¡û
>W141453466
JFCR01000019
Actinomycetota
Corynebacterium jeikeium [JFCR]
5073
4999
-
Met
CAT
[ENA]
¡û
>C181039049
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
1889051
1888977
-
Met
CAT
-
¡û
>C181144768
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
1772112
1772038
-
Met
CAT
-
¡û
>C181225941
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
1922983
1922909
-
Met
CAT
-
¡û
>C191114608
CP033897
Actinomycetota
Corynebacterium gerontici W8 [CP033897]
1659884
1659958
+
Met
CAT
-
¡û
>C191114681
CP033898
Actinomycetota
Corynebacterium pseudopelargi 812CH [CP033898]
708833
708759
-
Met
CAT
-
¡û
>C191138586
CP035299
Actinomycetota
Corynebacterium pelargi 136/3 [CP035299]
684015
683941
-
Met
CAT
-
¡û
>W141563955
JIAJ01000003
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
326006
326080
+
Met
CAT
[ENA]
¡û
>W09124050
ACHJ01000105
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
41956
41882
-
Met
CAT
[ENA]
¡û
>W1910225844
FMSX01000014
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
16513
16439
-
Met
CAT
[ENA]
¡û
>W1910226180
FMTZ01000008
Actinomycetota
Corynebacterium jeikeium [FMTZ]
9319
9393
+
Met
CAT
[ENA]
¡û
>W1910469860
FWYQ01000063
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
5736
5810
+
Met
CAT
[ENA]
¡û
>W1911243331
NSGK01000003
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
63246
63172
-
Met
CAT
[ENA]
¡û
>W1911243387
NSGL01000002
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
232386
232460
+
Met
CAT
[ENA]
¡û
>W1911243428
NSGM01000001
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
375080
375006
-
Met
CAT
[ENA]
¡û
>W1911243489
NSGN01000004
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
1531
1457
-
Met
CAT
[ENA]
¡û
>W1911243537
NSGO01000004
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
224273
224347
+
Met
CAT
[ENA]
¡û
>W1911243600
NSGP01000011
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
7516
7590
+
Met
CAT
[ENA]
¡û
>W1911498459
OCTS01000006
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
246563
246489
-
Met
CAT
[ENA]
¡û
>W1911551233
OVSI01000010
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
128631
128557
-
Met
CAT
[ENA]
¡û
>W1810118390
PHQP01000035
Actinomycetota
Corynebacterium heidelbergense DSM 104638 [PHQP]
22022
21948
-
Met
CAT
[ENA]
¡û
>W1810187481
PKHP01000020
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
4007
4083
+
Met
CAT
[ENA]
¡û
>W1810187501
PKHQ01000004
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
212623
212549
-
Met
CAT
[ENA]
¡û
>W1810326705
PUGE01000001
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
25910
25836
-
Met
CAT
[ENA]
¡û
>W1810623586
QHCV01000049
Actinomycetota
Corynebacterium heidelbergense 647 [QHCV]
17390
17316
-
Met
CAT
[ENA]
¡û
>C151012253
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
2000637
2000561
-
Met
CAT
[Ensembl]
¡û
>C151017671
CP007156
Actinomycetota
Corynebacterium falsenii DSM 44353 BL 8171 [CP007156]
914659
914735
+
Met
CAT
[Ensembl]
¡û
>C151045524
CP009211
Actinomycetota
Corynebacterium imitans DSM 44264 [CP009211]
1840704
1840630
-
Met
CAT
[Ensembl]
¡û
>C151079723
CP011311
Actinomycetota
Corynebacterium camporealensis DSM 44610 [CP011311]
1773076
1773002
-
Met
CAT
[Ensembl]
¡û
>W10113796
ADGN01000072
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
343
419
+
Met
CAT
[ENA]
¡û
>W10116387
ADNS01000031
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
85048
84972
-
Met
CAT
[ENA]
¡û
>W11117132
ADGN01000072
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
343
419
+
Met
CAT
[ENA]
¡û
>W1511356277
JRUB01000001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [JRUB]
795691
795617
-
Met
CAT
[ENA]
¡û
>W1511357095
JRVJ01000003
Actinomycetota
Corynebacterium auriscanis CIP 106629 [JRVJ]
250840
250916
+
Met
CAT
[ENA]
¡û
>W11121056
ADNS01000031
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
85048
84972
-
Met
CAT
[ENA]
¡û
>W1511438977
JUNC01000010
Actinomycetota
Corynebacterium jeikeium 931_CJEI [JUNC]
12127
12051
-
Met
CAT
[ENA]
¡û
>W1511459386
JVKJ01000001
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
257256
257332
+
Met
CAT
[ENA]
¡û
>W1511595769
LBNF01000051
Actinomycetota
Corynebacterium otitidis TD1 [LBNF]
1439
1515
+
Met
CAT
[ENA]
¡û
>C161070414
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
945345
945421
+
Met
CAT
[Ensembl]
¡û
>C131005412
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
2258409
2258335
-
Met
CAT
[Ensembl]
¡û
>W1610920911
LSTQ01000007
Actinomycetota
Corynebacterium stationis [LSTQ]
18828
18752
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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