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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219772 (65 seq.)
>W1711137453
LVBK01000013
Spirochaetota
Spirochaetales bacterium Spiro_09 [LVBK]
135478
135554
+
Pro
GGG
[ENA]
¡û
>W1711137479
LVBL01000006
Spirochaetota
Spirochaetales bacterium Spiro_10 [LVBL]
106921
106997
+
Pro
GGG
[ENA]
¡û
>W131000366
AGEB01000011
Spirochaetota
Treponema denticola US-Trep [AGEB]
15853
15780
-
Pro
GGG
[ENA]
¡û
>W131003038
AHAB01000002
Spirochaetota
Treponema denticola SP23 [AHAB]
518229
518156
-
Pro
GGG
[ENA]
¡û
>W131205953
ATFF01000006
Spirochaetota
Treponema maltophilum ATCC 51939 [ATFF]
713726
713653
-
Pro
GGG
[ENA]
¡û
>W141005397
AGDR01000041
Spirochaetota
Treponema denticola ASLM [AGDR]
2610
2537
-
Pro
GGG
[ENA]
¡û
>W141005493
AGDU01000004
Spirochaetota
Treponema denticola ATCC 35404 [AGDU]
183989
183916
-
Pro
GGG
[ENA]
¡û
>W141005661
AGDY01000001
Spirochaetota
Treponema denticola OTK [AGDY]
185627
185554
-
Pro
GGG
[ENA]
¡û
>W141055880
AOTM01000006
Spirochaetota
Treponema pedis str. T M1 [AOTM]
14362
14435
+
Pro
GGG
[ENA]
¡û
>W141055951
AOTN01000177
Spirochaetota
Treponema pedis str. B 683 [AOTN]
7810
7737
-
Pro
GGG
[ENA]
¡û
>W141055983
AOTO01000242
Spirochaetota
Treponema pedis isoM1111 [AOTO]
1166
1093
-
Pro
GGG
[ENA]
¡û
>W141056030
AOTP01000093
Spirochaetota
Treponema pedis isoE1186 [AOTP]
19410
19483
+
Pro
GGG
[ENA]
¡û
>W141056114
AOTR01000085
Spirochaetota
Treponema pedis isoM1224 [AOTR]
20989
21062
+
Pro
GGG
[ENA]
¡û
>W141064717
AQCF01000038
Spirochaetota
Treponema phagedenis 4A [AQCF]
254753
254680
-
Pro
GGG
[ENA]
¡û
>WENV180727698
ODGU01010070
[ODGU] human metagenome; G_DNA_Supragingival plaque
272
199
-
Pro
GGG
[ENA]
¡û
>WENV180751685
ODHS01109628
[ODHS] human metagenome; G_DNA_Supragingival plaque
61
134
+
Pro
GGG
[ENA]
¡û
>WENV180797118
ODJB01030482
[ODJB] human metagenome; G_DNA_Supragingival plaque
59
132
+
Pro
GGG
[ENA]
¡û
>WENV180810076
ODJK01110909
[ODJK] human metagenome; G_DNA_Subgingival plaque
340
267
-
Pro
GGG
[ENA]
¡û
>WENV180862329
ODLE01078578
[ODLE] human metagenome; G_DNA_Tongue dorsum
227
154
-
Pro
GGG
[ENA]
¡û
>WENV180939206
ODTX01020313
[ODTX] human metagenome; G_DNA_Supragingival plaque
185
112
-
Pro
GGG
[ENA]
¡û
>WENV180951442
ODUH01024447
[ODUH] human metagenome; G_DNA_Subgingival plaque
892
965
+
Pro
GGG
[ENA]
¡û
>WENV180980404
ODVE01000118
[ODVE] human metagenome; G_DNA_Supragingival plaque
14904
14977
+
Pro
GGG
[ENA]
¡û
>WENV181044598
ODXV01017663
[ODXV] human metagenome; G_DNA_Tongue dorsum
148
75
-
Pro
GGG
[ENA]
¡û
>WENV181076113
OEAP01001765
[OEAP] human metagenome; G_DNA_Supragingival plaque
6740
6667
-
Pro
GGG
[ENA]
¡û
>WENV181179525
OEJT01006814
[OEJT] human metagenome; G_DNA_Supragingival plaque
525
452
-
Pro
GGG
[ENA]
¡û
>W141146178
AWVH01000025
Spirochaetota
Treponema lecithinolyticum ATCC 700332 [AWVH]
12070
11997
-
Pro
GGG
[ENA]
¡û
>WENV183710854
PDWI01054658
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2826
2751
-
Pro
GGG
[ENA]
¡û
>WENV183711198
PDWI01063082
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
934
861
-
Pro
GGG
[ENA]
¡û
>WENV183712169
PDWI01091118
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
76
2
-
Pro
GGG
[ENA]
¡û
>WENV183713336
PDWI01134685
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1526
1600
+
Pro
GGG
[ENA]
¡û
>WENV183714664
PDWI01196933
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
696
623
-
Pro
GGG
[ENA]
¡û
>WENV183721980
PDWJ01098098
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
939
1013
+
Pro
GGG
[ENA]
¡û
>WENV183722176
PDWJ01110355
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
123
50
-
Pro
GGG
[ENA]
¡û
>WENV170671194
LAHU01024334
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
617
541
-
Pro
GGG
[ENA]
¡û
>WENV170686804
LFRM01163868
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
928
1004
+
Pro
GGG
[ENA]
¡û
>W2010610764
JABRPI010000002
Spirochaetota
Treponema phagedenis KS1 [JABRPI]
722128
722201
+
Pro
GGG
[ENA]
¡û
>W2010610774
JABRPI010000003
Spirochaetota
Treponema phagedenis KS1 [JABRPI]
128129
128202
+
Pro
GGG
[ENA]
¡û
>W2012082398
VLLD01000002
Spirochaetota
Treponema putidum ATCC 700334 [VLLD]
219650
219723
+
Pro
GGG
[ENA]
¡û
>C211033625
CP027018
Spirochaetota
Treponema phagedenis T320A [CP027018]
485603
485530
-
Pro
GGG
-
¡û
>C211154048
CP061839
Spirochaetota
Treponema pedis KS1 [CP061839]
2312607
2312534
-
Pro
GGG
-
¡û
>C211235916
CP067089
Spirochaetota
Breznakiella homolactica RmG30 [CP067089]
4284736
4284662
-
Pro
GGG
-
¡û
>W1510014503
BBPY01000478
Spirochaetota
Treponema endosymbiont of Eucomonympha sp. of Eucomonympha sp. E12 [BBPY]
408
333
-
Pro
GGG
[ENA]
¡û
>W1510014521
BBPZ01000133
Spirochaetota
Treponema endosymbiont of Eucomonympha sp. of Eucomonympha sp. E8 [BBPZ]
15984
15909
-
Pro
GGG
[ENA]
¡û
>C231045397
CP038803
Spirochaetota
Treponema putidum OMZ 846 [CP038803]
984503
984430
-
Pro
GGG
-
¡û
>C231045441
CP038804
Spirochaetota
Treponema putidum OMZ 835 [CP038804]
909722
909649
-
Pro
GGG
-
¡û
>C231062148
CP051198
Spirochaetota
Treponema sp. OMZ 787 [CP051198]
1510751
1510824
+
Pro
GGG
-
¡û
>C231062223
CP051200
Spirochaetota
Treponema sp. OMZ 789 [CP051200]
957393
957466
+
Pro
GGG
-
¡û
>C231062266
CP051201
Spirochaetota
Treponema sp. OMZ 790 [CP051201]
957295
957368
+
Pro
GGG
-
¡û
>C231062563
CP051303
Spirochaetota
Treponema denticola OT2B [CP051303]
1055236
1055309
+
Pro
GGG
-
¡û
>C231062606
CP051304
Spirochaetota
Treponema denticola CD-1 [CP051304]
1049258
1049331
+
Pro
GGG
-
¡û
>C231062643
CP051305
Spirochaetota
Treponema sp. OMZ 798 [CP051305]
1019182
1019255
+
Pro
GGG
-
¡û
>C231062688
CP051522
Spirochaetota
Treponema denticola OMZ 910 [CP051522]
1560245
1560318
+
Pro
GGG
-
¡û
>C231062980
CP051634
Spirochaetota
Treponema denticola OMZ 850 [CP051634]
1028115
1028188
+
Pro
GGG
-
¡û
>C231070468
CP054477
Spirochaetota
Treponema denticola OMZ 823 [CP054477]
1169971
1169898
-
Pro
GGG
-
¡û
>C231078230
CP058347
Spirochaetota
Treponema denticola OKA3 [CP058347]
1096229
1096302
+
Pro
GGG
-
¡û
>C231078573
CP058624
Spirochaetota
Treponema denticola OMZ 854 [CP058624]
1006975
1007048
+
Pro
GGG
-
¡û
>C241068690
CP042813
Spirochaetota
Treponema phagedenis S11.1 [CP042813]
1183128
1183055
-
Pro
GGG
-
¡û
>C241068736
CP042815
Spirochaetota
Treponema phagedenis S2.3 [CP042815]
1183011
1182938
-
Pro
GGG
-
¡û
>C241068772
CP042816
Spirochaetota
Treponema phagedenis B31.4 [CP042816]
1262210
1262137
-
Pro
GGG
-
¡û
>C241068828
CP042817
Spirochaetota
Treponema phagedenis B36.5 [CP042817]
1449473
1449400
-
Pro
GGG
-
¡û
>C241068867
CP042818
Spirochaetota
Treponema phagedenis B43.1 [CP042818]
1345577
1345504
-
Pro
GGG
-
¡û
>W11115149
ADEC01000014
Spirochaetota
Treponema denticola F0402 [ADEC]
564516
564443
-
Pro
GGG
[ENA]
¡û
>W11135645
AEFH01000039
Spirochaetota
Treponema phagedenis F0421 [AEFH]
7257
7184
-
Pro
GGG
[ENA]
¡û
>W1610948573
LVBK01000013
Spirochaetota
Spirochaetales bacterium Spiro_09 [LVBK]
135478
135554
+
Pro
GGG
[ENA]
¡û
>W1610948599
LVBL01000006
Spirochaetota
Spirochaetales bacterium Spiro_10 [LVBL]
106921
106997
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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