This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219862 (66 seq.)
>W1710883328
LMVR01000227
Actinomycetota
Mycobacterium avium subsp. hominissuis [LMVR]
19388
19312
-
Phe
GAA
[ENA]
¡û
>W1710883669
LMVZ01000010
Actinomycetota
Mycobacterium avium subsp. hominissuis [LMVZ]
103562
103638
+
Phe
GAA
[ENA]
¡û
>W1710890487
LNBR01000017
Actinomycetota
Mycobacterium avium subsp. hominissuis [LNBR]
26831
26755
-
Phe
GAA
[ENA]
¡û
>W1710890576
LNBT01000071
Actinomycetota
Mycobacterium avium subsp. hominissuis [LNBT]
2723
2647
-
Phe
GAA
[ENA]
¡û
>W1711008475
LQQA01000001
Actinomycetota
Mycolicibacterium wolinskyi [LQQA]
49065
48991
-
Phe
GAA
[ENA]
¡û
>W1711008557
LQQB01000141
Actinomycetota
Mycobacterium xenopi [LQQB]
769
693
-
Phe
GAA
[ENA]
¡û
>W1711172923
LWCM01000127
Actinomycetota
Mycobacterium persicum kansasii [LWCM]
19223
19147
-
Phe
GAA
[ENA]
¡û
>W1711286404
LZTB01000010
Actinomycetota
Mycobacterium sp. 852013-50091_SCH5140682 [LZTB]
133571
133645
+
Phe
GAA
[ENA]
¡û
>W1711428392
MIHE01000008
Actinomycetota
Mycobacterium shimoidei [MIHE]
49670
49744
+
Phe
GAA
[ENA]
¡û
>W1711525190
MLQM01000170
Actinomycetota
Mycobacterium talmoniae NE-TNMC-100812 [MLQM]
6525
6601
+
Phe
GAA
[ENA]
¡û
>W1711612592
MOWS01000102
Actinomycetota
Mycobacterium malmoense [MOWS]
10580
10656
+
Phe
GAA
[ENA]
¡û
>W1711626118
MPJF01000009
Actinomycetota
Mycobacterium heckeshornense [MPJF]
56425
56349
-
Phe
GAA
[ENA]
¡û
>W1711772149
MVHD01000003
Actinomycetota
Mycobacterium alsense [MVHD]
93872
93948
+
Phe
GAA
[ENA]
¡û
>W1711772585
MVHM01000032
Actinomycetota
Mycobacterium branderi [MVHM]
37237
37161
-
Phe
GAA
[ENA]
¡û
>W1711773723
MVIL01000070
Actinomycetota
Mycobacterium timonense [MVIL]
21130
21206
+
Phe
GAA
[ENA]
¡û
>W1711792595
MWKV01000001
Actinomycetota
Mycobacterium persicum kansasii [MWKV]
2213865
2213789
-
Phe
GAA
[ENA]
¡û
>W1711792687
MWKX01000001
Actinomycetota
Mycobacterium persicum kansasii [MWKX]
2390806
2390730
-
Phe
GAA
[ENA]
¡û
>W1711792733
MWKY01000001
Actinomycetota
Mycobacterium kansasii [MWKY]
2330676
2330600
-
Phe
GAA
[ENA]
¡û
>W1711792779
MWKZ01000001
Actinomycetota
Mycobacterium persicum kansasii [MWKZ]
2400880
2400804
-
Phe
GAA
[ENA]
¡û
>W1711795865
MWQA01000001
Actinomycetota
Mycobacterium persicum kansasii [MWQA]
2301467
2301391
-
Phe
GAA
[ENA]
¡û
>W1711966640
NCXN01000004
Actinomycetota
Mycobacterium paraintracellulare [NCXN]
118195
118271
+
Phe
GAA
[ENA]
¡û
>WENV180745582
ODHL01000069
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
4529
4455
-
Phe
GAA
[ENA]
¢þ
>WENV180878769
ODLY01000023
[ODLY] human metagenome; G_DNA_Anterior nares
54156
54230
+
Phe
GAA
[ENA]
¢þ
>WENV180913538
ODSU01013315
[ODSU] human metagenome; G_DNA_Anterior nares
156
82
-
Phe
GAA
[ENA]
¢þ
>WENV180918077
ODTF01000068
[ODTF] human metagenome; G_DNA_Anterior nares
25448
25522
+
Phe
GAA
[ENA]
¢þ
>WENV180966817
ODUR01023284
[ODUR] human metagenome; G_DNA_Anterior nares
57
131
+
Phe
GAA
[ENA]
¢þ
>WENV181007025
ODWC01005355
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
76
150
+
Phe
GAA
[ENA]
¢þ
>WENV181025043
ODWY01000205
[ODWY] human metagenome; G_DNA_Anterior nares
156
82
-
Phe
GAA
[ENA]
¢þ
>WENV181042311
ODXT01005670
[ODXT] human metagenome; G_DNA_R_Retroauricular crease
525
599
+
Phe
GAA
[ENA]
¢þ
>WENV181123297
OEFP01000005
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
4533
4459
-
Phe
GAA
[ENA]
¢þ
>WENV181166162
OEIS01510509
[OEIS] soil metagenome; soil
123
47
-
Phe
GAA
[ENA]
¢þ
>W141189688
AYNP01000592
Actinomycetota
Mycobacterium avium 09-5983 [AYNP]
19554
19478
-
Phe
GAA
[ENA]
¡û
>W141190093
AYNY01000577
Actinomycetota
Mycobacterium avium subsp. avium 10-9275 [AYNY]
39121
39045
-
Phe
GAA
[ENA]
¡û
>W141261485
CCAU010000017
Actinomycetota
Mycobacterium triplex [CCAU]
348757
348681
-
Phe
GAA
[ENA]
¡û
>W141285668
JAOC01000004
Actinomycetota
Mycobacterium xenopi 3993 [JAOC]
970067
969991
-
Phe
GAA
[ENA]
¡û
>C191062005
CP028731
Actinomycetota
Mycobacterium avium HJW [CP028731]
3705260
3705184
-
Phe
GAA
-
¡û
>W09109495
ABUH01000002
Actinomycetota
Nakamurella multipartita DSM 44233 [ABUH]
225212
225136
-
Phe
GAA
[ENA]
¡û
>W09121462
ACFI01000032
Actinomycetota
Mycobacterium avium subsp. avium ATCC 25291 [ACFI]
26069
26145
+
Phe
GAA
[ENA]
¡û
>W141672034
JLIC01000009
Actinomycetota
Mycobacterium avium XTB13-223 [JLIC]
485660
485584
-
Phe
GAA
[ENA]
¡û
>W1910343578
FTRV01000015
Actinomycetota
Mycobacterium terramassiliense AB308 [FTRV]
664203
664279
+
Phe
GAA
[ENA]
¡û
>W1910370924
FUEZ01000004
Actinomycetota
Mycobacterium numidiamassiliense AB215 [FUEZ]
882867
882941
+
Phe
GAA
[ENA]
¡û
>W1910751669
MKCW01000067
Actinomycetota
Mycobacterium avium subsp. hominissuis OCU404 [MKCW]
14354
14278
-
Phe
GAA
[ENA]
¡û
>W1910813995
MVIF01000147
Actinomycetota
Mycobacterium persicum AFPC-000227 [MVIF]
8259
8335
+
Phe
GAA
[ENA]
¡û
>W1910989951
NKQZ01000001
Actinomycetota
Mycobacterium persicum H48 [NKQZ]
2196285
2196209
-
Phe
GAA
[ENA]
¡û
>W1910989971
NKRA01000001
Actinomycetota
Mycobacterium persicum H47 [NKRA]
3931975
3932051
+
Phe
GAA
[ENA]
¡û
>W1810003517
BFAB01000018
Actinomycetota
Mycobacterium sp. MFM001 [BFAB]
57123
57199
+
Phe
GAA
[ENA]
¡û
>W1810058873
PDKV01000016
Actinomycetota
Mycobacterium celatum NCTC 12882 [PDKV]
4038
4114
+
Phe
GAA
[ENA]
¡û
>W1810070474
PECY01000028
Actinomycetota
Mycobacterium marinum VIMS9 [PECY]
28285
28359
+
Phe
GAA
[ENA]
¡û
>W1810074994
PEHE01000120
Actinomycetota
Mycobacterium avium subsp. hominissuis MAH-E-14-1 [PEHE]
82571
82647
+
Phe
GAA
[ENA]
¡û
>C151094721
CP012390
Actinomycetota
Lawsonella clevelandensis X1698 [CP012390]
562012
561938
-
Phe
GAA
-
¡û
>C10109902
CP001737
Actinomycetota
Nakamurella multipartita DSM 44233 [CP001737]
875950
875874
-
Phe
GAA
[Ensembl]
¡û
>W1510456362
CPWZ01000287
Actinomycetota
Mycobacterium tuberculosis 401416 [CPWZ]
621
547
-
Phe
GAA
[ENA]
¡û
>W1511685561
LFOF01000002
Actinomycetota
Mycobacterium heckeshornense RLE [LFOF]
80134
80210
+
Phe
GAA
[ENA]
¡û
>C121010938
CP003324
Actinomycetota
Mycobacterium paraintracellulare MOTT64 [CP003324]
684586
684662
+
Phe
GAA
[Ensembl]
¡û
>W121060183
AJFI01000007
Actinomycetota
Mycobacterium xenopi RIVM700367 [AJFI]
1296
1220
-
Phe
GAA
[ENA]
¡û
>W1610460746
FKJN01000076
Actinomycetota
Mycobacterium avium subsp. hominissuis [FKJN]
19380
19304
-
Phe
GAA
[ENA]
¡û
>C131002042
CP003078
Actinomycetota
Mycobacterium sp. JS623 [CP003078]
5551068
5550992
-
Phe
GAA
[Ensembl]
¡û
>W1610617488
LGTW01000004
Actinomycetota
Mycolicibacterium wolinskyi [LGTW]
191182
191108
-
Phe
GAA
[ENA]
¡û
>W1610745254
LMVR01000227
Actinomycetota
Mycobacterium avium subsp. hominissuis [LMVR]
19388
19312
-
Phe
GAA
[ENA]
¡û
>W1610745595
LMVZ01000010
Actinomycetota
Mycobacterium avium subsp. hominissuis [LMVZ]
103562
103638
+
Phe
GAA
[ENA]
¡û
>W1610750865
LNBR01000017
Actinomycetota
Mycobacterium avium subsp. hominissuis [LNBR]
26831
26755
-
Phe
GAA
[ENA]
¡û
>W1610750954
LNBT01000071
Actinomycetota
Mycobacterium avium subsp. hominissuis [LNBT]
2723
2647
-
Phe
GAA
[ENA]
¡û
>W1610981528
LWCM01000127
Actinomycetota
Mycobacterium persicum kansasii [LWCM]
19223
19147
-
Phe
GAA
[ENA]
¡û
>W1611043965
LZTB01000010
Actinomycetota
Mycobacterium sp. 852013-50091_SCH5140682 [LZTB]
133571
133645
+
Phe
GAA
[ENA]
¡û
>W1710460310
FKJN01000076
Actinomycetota
Mycobacterium avium subsp. hominissuis [FKJN]
19380
19304
-
Phe
GAA
[ENA]
¡û
>W1710743075
LGTW01000004
Actinomycetota
Mycolicibacterium wolinskyi [LGTW]
191182
191108
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK