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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219866 (22 seq.)
>W1711708231
MSTI01000026
Deinococcota
Deinococcus marmoris [MSTI]
212
288
+
Pro
TGG
[ENA]
¡û
>W1711708267
MSTI01000173
Deinococcota
Deinococcus marmoris [MSTI]
34590
34666
+
Pro
TGG
[ENA]
¡û
>W131176754
ARKH01000088
Deinococcota
Deinococcus aquatilis DSM 23025 [ARKH]
704
780
+
Pro
TGG
[ENA]
¡û
>W131178665
ARLS01000053
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
290322
290398
+
Pro
TGG
[ENA]
¡û
>W131213902
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1503709
1503633
-
Pro
TGG
[ENA]
¡û
>W131237111
AUMV01000014
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
14384
14460
+
Pro
TGG
[ENA]
¡û
>C007736
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
2353842
2353766
-
Pro
TGG
[Ensembl]
¡û
>W141169929
AXWT01000024
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
21743
21819
+
Pro
TGG
[ENA]
¡û
>W141220836
AZYF01000748
Deinococcota
Deinococcus pimensis DSM 21231 [AZYF]
1904
1980
+
Pro
TGG
[ENA]
¡û
>WENV183636526
OOKD01059617
[OOKD] human gut metagenome; Skin biopsy
361
437
+
Pro
TGG
[ENA]
¢þ
>C181134300
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
2628149
2628073
-
Pro
TGG
-
¡û
>C191018447
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
2506114
2506190
+
Pro
TGG
-
¡û
>W141525687
JHAC01000027
Deinococcota
Deinococcus phoenicis [JHAC]
3350
3274
-
Pro
TGG
[ENA]
¡û
>W141711952
JMQF01000040
Deinococcota
Deinococcus sp. RL [JMQF]
20580
20656
+
Pro
TGG
[ENA]
¡û
>W141731128
JNIV01000031
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
33354
33430
+
Pro
TGG
[ENA]
¡û
>W141816938
JQKG01000040
Deinococcota
Deinococcus misasensis DSM 22328 [JQKG]
22413
22489
+
Pro
TGG
[ENA]
¡û
>W141821110
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
1749643
1749719
+
Pro
TGG
[ENA]
¡û
>W1911597504
PNOR01000061
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
13070
13146
+
Pro
TGG
[ENA]
¡û
>W1810238341
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
2378428
2378352
-
Pro
TGG
[ENA]
¡û
>C11107136
CP002454
Deinococcota
Deinococcus maricopensis DSM 21211 [CP002454]
3487959
3488035
+
Pro
TGG
[Ensembl]
¡û
>C161034754
CP011387
Deinococcota
Deinococcus puniceus DY1 [CP011387]
2701768
2701692
-
Pro
TGG
[Ensembl]
¡û
>W1710542285
FNZA01000018
Deinococcota
Deinococcus reticulitermitis [FNZA]
61562
61638
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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