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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.221462 (73 seq.)
>WENV180009742
FLSC01065519
[FLSC] metagenome; saliva
12
88
+
Lys
CTT
[ENA]
¡û
>WENV180550174
OCIZ01030257
[OCIZ] human oral metagenome; human oral
190
114
-
Lys
CTT
[ENA]
¡û
>WENV180705206
ODEJ01001517
[ODEJ] human metagenome; G_DNA_Tongue dorsum
8076
8000
-
Lys
CTT
[ENA]
¡û
>WENV180707842
ODFJ01000044
[ODFJ] human metagenome; G_DNA_Tongue dorsum
104016
103940
-
Lys
CTT
[ENA]
¡û
>WENV180720613
ODGJ01075508
[ODGJ] human metagenome; G_DNA_Tongue dorsum
6
82
+
Lys
CTT
[ENA]
¡û
>WENV180721658
ODGL01004885
[ODGL] human metagenome; G_DNA_Subgingival plaque
1695
1619
-
Lys
CTT
[ENA]
¡û
>WENV180727816
ODGU01012886
[ODGU] human metagenome; G_DNA_Supragingival plaque
811
887
+
Lys
CTT
[ENA]
¡û
>WENV180757078
ODHW01000022
[ODHW] human metagenome; G_DNA_Tongue dorsum
10895
10971
+
Lys
CTT
[ENA]
¡û
>WENV180757337
ODHW01000227
[ODHW] human metagenome; G_DNA_Tongue dorsum
22811
22735
-
Lys
CTT
[ENA]
¡û
>WENV180764031
ODIA01013883
[ODIA] human metagenome; G_DNA_Tongue dorsum
1106
1182
+
Lys
CTT
[ENA]
¡û
>WENV180768752
ODIG01015202
[ODIG] human metagenome; G_DNA_Tongue dorsum
2360
2284
-
Lys
CTT
[ENA]
¡û
>WENV180774182
ODIJ01011484
[ODIJ] human metagenome; G_DNA_Tongue dorsum
2343
2267
-
Lys
CTT
[ENA]
¡û
>WENV180776594
ODIK01064649
[ODIK] human metagenome; G_DNA_Tongue dorsum
405
329
-
Lys
CTT
[ENA]
¡û
>WENV180779993
ODIN01031877
[ODIN] human metagenome; G_DNA_Throat
646
570
-
Lys
CTT
[ENA]
¡û
>WENV180784006
ODIQ01077629
[ODIQ] human metagenome; G_DNA_Tongue dorsum
17
93
+
Lys
CTT
[ENA]
¡û
>WENV180790682
ODIT01029514
[ODIT] human metagenome; G_DNA_Tongue dorsum
6
82
+
Lys
CTT
[ENA]
¡û
>WENV180792679
ODIW01001508
[ODIW] human metagenome; G_DNA_Tongue dorsum
7551
7475
-
Lys
CTT
[ENA]
¡û
>WENV180803108
ODJE01038122
[ODJE] human metagenome; G_DNA_Tongue dorsum
614
690
+
Lys
CTT
[ENA]
¡û
>WENV180808380
ODJK01000010
[ODJK] human metagenome; G_DNA_Subgingival plaque
31947
31871
-
Lys
CTT
[ENA]
¡û
>WENV180814401
ODJO01015434
[ODJO] human metagenome; G_DNA_Supragingival plaque
1865
1941
+
Lys
CTT
[ENA]
¡û
>WENV180815504
ODJP01000584
[ODJP] human metagenome; G_DNA_Tongue dorsum
28106
28182
+
Lys
CTT
[ENA]
¡û
>WENV180820261
ODJR01003415
[ODJR] human metagenome; G_DNA_Tongue dorsum
2819
2743
-
Lys
CTT
[ENA]
¡û
>WENV180821645
ODJS01029863
[ODJS] human metagenome; G_DNA_Tongue dorsum
476
400
-
Lys
CTT
[ENA]
¡û
>WENV180853278
ODKW01055771
[ODKW] human metagenome; G_DNA_Tongue dorsum
21
97
+
Lys
CTT
[ENA]
¡û
>WENV180853549
ODKW01179590
[ODKW] human metagenome; G_DNA_Tongue dorsum
209
133
-
Lys
CTT
[ENA]
¡û
>WENV180856130
ODKZ01003772
[ODKZ] human metagenome; G_DNA_Tongue dorsum
4201
4125
-
Lys
CTT
[ENA]
¡û
>WENV180863362
ODLH01000022
[ODLH] human metagenome; G_DNA_Tongue dorsum
22509
22433
-
Lys
CTT
[ENA]
¡û
>WENV180873609
ODLP01012463
[ODLP] human metagenome; G_DNA_Tongue dorsum
796
872
+
Lys
CTT
[ENA]
¡û
>WENV180880898
ODLZ01084144
[ODLZ] human metagenome; G_DNA_Tongue dorsum
163
239
+
Lys
CTT
[ENA]
¡û
>WENV180882273
ODMC01000001
[ODMC] human metagenome; G_DNA_Tongue dorsum
583956
584032
+
Lys
CTT
[ENA]
¡û
>WENV180883439
ODMC01005277
[ODMC] human metagenome; G_DNA_Tongue dorsum
4955
4879
-
Lys
CTT
[ENA]
¡û
>WENV180896363
ODNI01000432
[ODNI] human metagenome; G_DNA_Tongue dorsum
21320
21244
-
Lys
CTT
[ENA]
¡û
>WENV180896851
ODNI01002740
[ODNI] human metagenome; G_DNA_Tongue dorsum
6585
6509
-
Lys
CTT
[ENA]
¡û
>WENV180897278
ODNI01012483
[ODNI] human metagenome; G_DNA_Tongue dorsum
2052
1976
-
Lys
CTT
[ENA]
¡û
>WENV180900158
ODOJ01000574
[ODOJ] human metagenome; G_DNA_Tongue dorsum
25027
25103
+
Lys
CTT
[ENA]
¡û
>WENV180917366
ODTD01016797
[ODTD] human metagenome; G_DNA_Tongue dorsum
120
44
-
Lys
CTT
[ENA]
¡û
>WENV180920331
ODTH01003748
[ODTH] human metagenome; G_DNA_Tongue dorsum
2631
2707
+
Lys
CTT
[ENA]
¡û
>WENV180932200
ODTP01030000
[ODTP] human metagenome; G_DNA_Tongue dorsum
1118
1194
+
Lys
CTT
[ENA]
¡û
>WENV180948582
ODUG01002199
[ODUG] human metagenome; G_DNA_Tongue dorsum
165
241
+
Lys
CTT
[ENA]
¡û
>WENV180952995
ODUI01005867
[ODUI] human metagenome; G_DNA_Tongue dorsum
3742
3818
+
Lys
CTT
[ENA]
¡û
>WENV180960299
ODUM01021891
[ODUM] human metagenome; G_DNA_Tongue dorsum
319
243
-
Lys
CTT
[ENA]
¡û
>WENV180976165
ODUY01051921
[ODUY] human metagenome; G_DNA_Supragingival plaque
548
624
+
Lys
CTT
[ENA]
¡û
>WENV180985517
ODVJ01007012
[ODVJ] human metagenome; G_DNA_Tongue dorsum
2897
2973
+
Lys
CTT
[ENA]
¡û
>WENV180990190
ODVN01000587
[ODVN] human metagenome; G_DNA_Tongue dorsum
12502
12578
+
Lys
CTT
[ENA]
¡û
>WENV180990479
ODVN01001560
[ODVN] human metagenome; G_DNA_Tongue dorsum
3201
3125
-
Lys
CTT
[ENA]
¡û
>WENV180998789
ODVT01001997
[ODVT] human metagenome; G_DNA_Buccal mucosa
2438
2362
-
Lys
CTT
[ENA]
¡û
>WENV181002461
ODVX01000430
[ODVX] human metagenome; G_DNA_Supragingival plaque
20163
20087
-
Lys
CTT
[ENA]
¡û
>WENV181016822
ODWR01008326
[ODWR] human metagenome; G_DNA_Tongue dorsum
2484
2560
+
Lys
CTT
[ENA]
¡û
>WENV181020016
ODWU01035700
[ODWU] human metagenome; G_DNA_Supragingival plaque
786
862
+
Lys
CTT
[ENA]
¡û
>WENV181037772
ODXQ01000012
[ODXQ] human metagenome; G_DNA_Tongue dorsum
70472
70548
+
Lys
CTT
[ENA]
¡û
>WENV181040805
ODXS01001171
[ODXS] human metagenome; G_DNA_Tongue dorsum
8724
8800
+
Lys
CTT
[ENA]
¡û
>WENV181046478
ODXW01042252
[ODXW] human metagenome; G_DNA_Tongue dorsum
2
78
+
Lys
CTT
[ENA]
¡û
>WENV181057580
ODYL01000425
[ODYL] human metagenome; G_DNA_Tongue dorsum
74
150
+
Lys
CTT
[ENA]
¡û
>WENV181063633
ODYP01001993
[ODYP] human metagenome; G_DNA_Supragingival plaque
8794
8870
+
Lys
CTT
[ENA]
¡û
>WENV181074064
OEAO01002682
[OEAO] human metagenome; G_DNA_Tongue dorsum
7794
7718
-
Lys
CTT
[ENA]
¡û
>WENV181086207
OEAY01000199
[OEAY] human metagenome; G_DNA_Tongue dorsum
2246
2322
+
Lys
CTT
[ENA]
¡û
>WENV181086430
OEAY01000631
[OEAY] human metagenome; G_DNA_Tongue dorsum
3012
2936
-
Lys
CTT
[ENA]
¡û
>WENV181094227
OEBY01000028
[OEBY] human metagenome; G_DNA_Tongue dorsum
89044
89120
+
Lys
CTT
[ENA]
¡û
>WENV181095122
OEBY01003236
[OEBY] human metagenome; G_DNA_Tongue dorsum
2241
2317
+
Lys
CTT
[ENA]
¡û
>WENV181101479
OECT01000038
[OECT] human metagenome; G_DNA_Tongue dorsum
124399
124323
-
Lys
CTT
[ENA]
¡û
>WENV181102329
OECT01001972
[OECT] human metagenome; G_DNA_Tongue dorsum
5396
5320
-
Lys
CTT
[ENA]
¡û
>WENV181102470
OECT01003677
[OECT] human metagenome; G_DNA_Tongue dorsum
5736
5812
+
Lys
CTT
[ENA]
¡û
>WENV181111948
OEEL01000045
[OEEL] human metagenome; G_DNA_Tongue dorsum
2101
2177
+
Lys
CTT
[ENA]
¡û
>WENV181113544
OEEL01039331
[OEEL] human metagenome; G_DNA_Tongue dorsum
81
5
-
Lys
CTT
[ENA]
¡û
>WENV181138409
OEGN01000042
[OEGN] human metagenome; G_DNA_Tongue dorsum
263
187
-
Lys
CTT
[ENA]
¡û
>WENV181140522
OEGN01224297
[OEGN] human metagenome; G_DNA_Tongue dorsum
77
1
-
Lys
CTT
[ENA]
¡û
>WENV181149990
OEHW01000192
[OEHW] human metagenome; G_DNA_Tongue dorsum
8838
8914
+
Lys
CTT
[ENA]
¡û
>WENV181176301
OEJR01000785
[OEJR] human metagenome; G_DNA_Saliva
2631
2707
+
Lys
CTT
[ENA]
¡û
>WENV170716247
LSPZ01000091
[LSPZ] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 2
9005
9081
+
Lys
CTT
[ENA]
¡û
>WENV170722056
LSQX01214449
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1455
1531
+
Lys
CTT
[ENA]
¡û
>W2011551417
SDRG01000005
Unclassified
TM7 phylum sp. oral taxon 351 TM7_HOT_351-SAG4 [SDRG]
13237
13161
-
Lys
CTT
[ENA]
¡û
>W2011551452
SDRH01000020
Unclassified
TM7 phylum sp. oral taxon 351 TM7_HOT_351-SAG3 [SDRH]
1583
1507
-
Lys
CTT
[ENA]
¡û
>W2011551512
SDRJ01000058
Unclassified
TM7 phylum sp. oral taxon 351 TM7_HOT_351-SAG1 [SDRJ]
3111
3187
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK