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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.222433 (33 seq.)
>W1711096475
LTHT01000321
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
946
870
-
Arg
CCT
[ENA]
¡û
>WENV181340911
OFMH01003130
[OFMH] human gut metagenome; human gut
602
526
-
Arg
CCT
[ENA]
¢þ
>WENV181432702
OGDD01022579
[OGDD] metagenome; Human gut stool
328
252
-
Arg
CCT
[ENA]
¢þ
>WENV181454568
OGED01007387
[OGED] metagenome; Human gut stool
181
257
+
Arg
CCT
[ENA]
¢þ
>WENV181457801
OGEI01020861
[OGEI] metagenome; Human gut stool
564
640
+
Arg
CCT
[ENA]
¢þ
>WENV181474405
OGFC01014464
[OGFC] metagenome; Human gut stool
1005
1081
+
Arg
CCT
[ENA]
¢þ
>WENV181557608
OGIV01052061
[OGIV] metagenome; Human gut stool
256
332
+
Arg
CCT
[ENA]
¢þ
>WENV181557841
OGIW01000275
[OGIW] metagenome; Human gut stool
535
459
-
Arg
CCT
[ENA]
¢þ
>WENV181560436
OGJC01000205
[OGJC] metagenome; Human gut stool
71403
71479
+
Arg
CCT
[ENA]
¢þ
>WENV181563294
OGJG01014282
[OGJG] metagenome; Human gut stool
83
159
+
Arg
CCT
[ENA]
¢þ
>WENV181580161
OGJZ01007984
[OGJZ] metagenome; Human gut stool
1227
1303
+
Arg
CCT
[ENA]
¢þ
>WENV181582675
OGKB01044361
[OGKB] metagenome; Human gut stool
581
505
-
Arg
CCT
[ENA]
¢þ
>WENV181627792
OGMN01005614
[OGMN] metagenome; Human gut stool
2076
2000
-
Arg
CCT
[ENA]
¢þ
>WENV181900661
OGXV01028898
[OGXV] human gut metagenome; faeces
624
700
+
Arg
CCT
[ENA]
¢þ
>WENV181947944
OGZE01000062
[OGZE] human gut metagenome; faeces
1318
1242
-
Arg
CCT
[ENA]
¢þ
>WENV181965642
OGZT01001950
[OGZT] human gut metagenome; faeces
4411
4335
-
Arg
CCT
[ENA]
¢þ
>WENV181970843
OGZY01000124
[OGZY] human gut metagenome; faeces
53109
53185
+
Arg
CCT
[ENA]
¢þ
>WENV181987127
OHAM01020234
[OHAM] human gut metagenome; faeces
535
459
-
Arg
CCT
[ENA]
¢þ
>WENV181994451
OHAS01045774
[OHAS] human gut metagenome; faeces
841
917
+
Arg
CCT
[ENA]
¢þ
>WENV182866744
OKRR01001149
[OKRR] human gut metagenome; faeces
23938
24014
+
Arg
CCT
[ENA]
¢þ
>WENV183290424
OLSH01000261
[OLSH] human gut metagenome; faeces
54051
54127
+
Arg
CCT
[ENA]
¢þ
>WENV183760979
PPYE01249812
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1000
1076
+
Arg
CCT
[ENA]
¢þ
>WENV183764152
PPYE01316564
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1109
1185
+
Arg
CCT
[ENA]
¢þ
>C181003940
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1983144
1983068
-
Arg
CCT
-
¡û
>C181161009
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
2802806
2802730
-
Arg
CCT
-
¡û
>C181216758
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
1381018
1381094
+
Arg
CCT
-
¡û
>C191210210
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
1328103
1328179
+
Arg
CCT
-
¡û
>C191219308
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1473207
1473131
-
Arg
CCT
-
¡û
>W09118785
ACDH01000047
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
54178
54254
+
Arg
CCT
[ENA]
¡û
>W1910194480
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1893478
1893402
-
Arg
CCT
[ENA]
¡û
>W1810818372
QSDE01000001
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
54098
54174
+
Arg
CCT
[ENA]
¡û
>W1810832224
QSOW01000015
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
5109
5033
-
Arg
CCT
[ENA]
¡û
>W121021733
AGWJ01000019
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
1433
1357
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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