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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.223431 (25 seq.)
>W131045616
AMRO01000055
Bacillota
Parageobacillus caldoxylosilyticus CIC9 [AMRO]
934
1010
+
Ile
GAT
[ENA]
¡û
>W141056184
AOTZ01000002
Bacillota
Parageobacillus genomosp. 1 NUB3621 [AOTZ]
212838
212914
+
Ile
GAT
[ENA]
¡û
>W141097216
AVGH01000061
Bacillota
Anoxybacillus flavithermus subsp. yunnanensis str. E13 [AVGH]
253
328
+
Ile
GAT
[ENA]
¡û
>W141193692
AYSF01000096
Bacillota
Geobacillus sp. MAS1 [AYSF]
10885
10809
-
Ile
GAT
[ENA]
¡û
>WENV183747324
PPCM01000903
[PPCM] marine sediment metagenome; marine sediment
16931
17007
+
Ile
GAT
[ENA]
¢þ
>C181020074
CP016552
Bacillota
Geobacillus stearothermophilus DSM 458 [CP016552]
1625877
1625804
-
Ile
GAT
-
¡û
>C181026992
CP017690
Bacillota
Geobacillus thermodenitrificans ID-1 [CP017690]
269672
269745
+
Ile
GAT
-
¡û
>C181027015
CP017690
Bacillota
Geobacillus thermodenitrificans ID-1 [CP017690]
2081659
2081582
-
Ile
GAT
-
¡û
>C181027017
CP017690
Bacillota
Geobacillus thermodenitrificans ID-1 [CP017690]
2061084
2061007
-
Ile
GAT
-
¡û
>C181027158
CP017692
Bacillota
Geobacillus lituanicus N-3 [CP017692]
408636
408563
-
Ile
GAT
-
¡û
>C181046719
CP020815
Bacillota
Anoxybacillus flavithermus DSM 2641T [CP020815]
1045091
1045166
+
Ile
GAT
-
¡û
>C181046727
CP020815
Bacillota
Anoxybacillus flavithermus DSM 2641T [CP020815]
533159
533083
-
Ile
GAT
-
¡û
>C181046730
CP020815
Bacillota
Anoxybacillus flavithermus DSM 2641T [CP020815]
514474
514398
-
Ile
GAT
-
¡û
>C191042109
CP026365
Bacillota
Neobacillus thermocopriae DUT50_236 [CP026365]
2632816
2632741
-
Ile
GAT
-
¡û
>C191042115
CP026365
Bacillota
Neobacillus thermocopriae DUT50_236 [CP026365]
310880
310804
-
Ile
GAT
-
¡û
>C191042118
CP026365
Bacillota
Neobacillus thermocopriae DUT50_236 [CP026365]
292208
292132
-
Ile
GAT
-
¡û
>C09106442
CP001638
Bacillota
Geobacillus sp. WCH70 [CP001638]
12156
12229
+
Ile
GAT
[Ensembl]
¡û
>C09106445
CP001638
Bacillota
Geobacillus sp. WCH70 [CP001638]
32835
32908
+
Ile
GAT
[Ensembl]
¡û
>C09106498
CP001638
Bacillota
Geobacillus sp. WCH70 [CP001638]
570613
570689
+
Ile
GAT
[Ensembl]
¡û
>W1810154820
PIZS01000023
Bacillota
Geobacillus thermodenitrificans OS27 [PIZS]
344
421
+
Ile
GAT
[ENA]
¡û
>W1810154829
PIZS01000033
Bacillota
Geobacillus thermodenitrificans OS27 [PIZS]
96473
96546
+
Ile
GAT
[ENA]
¡û
>W1810154905
PIZS01000153
Bacillota
Geobacillus thermodenitrificans OS27 [PIZS]
344
421
+
Ile
GAT
[ENA]
¡û
>W1810779641
QQOL01000001
Bacillota
Parageobacillus thermoglucosidasius DSM 21625 [QQOL]
587144
587069
-
Ile
GAT
[ENA]
¡û
>W1810779645
QQOL01000001
Bacillota
Parageobacillus thermoglucosidasius DSM 21625 [QQOL]
568452
568377
-
Ile
GAT
[ENA]
¡û
>W1511534365
JYNW01000091
Bacillota
Geobacillus stearothermophilus ATCC 12980 [JYNW]
6994
7070
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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