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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.223655 (12 seq.)
>W131182407
ARQI01000130
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
100009
100089
+
Leu
TAG
[ENA]
¡û
>WENV180116941
OARB01000212
[OARB] human gut metagenome; ENVO:feces
3165
3245
+
Leu
TAG
[ENA]
¢þ
>WENV180117756
OARM01000048
[OARM] human gut metagenome; ENVO:feces
85431
85511
+
Leu
TAG
[ENA]
¢þ
>W09108417
ABTG01000001
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
895029
894949
-
Leu
TAG
[ENA]
¡û
>W1910000002
AFQM01000002
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
17167
17247
+
Leu
TAG
[ENA]
¡û
>W1910569146
JJMJ01000157
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
459
379
-
Leu
TAG
[ENA]
¡û
>W1910574876
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
403635
403715
+
Leu
TAG
[ENA]
¡û
>C10101966
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
233138
233058
-
Leu
TAG
[Ensembl]
¡û
>C10101976
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1490375
1490455
+
Leu
TAG
[Ensembl]
¡û
>C131001498
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
1735600
1735520
-
Leu
TAG
[Ensembl]
¡û
>C131003824
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
2664337
2664417
+
Leu
TAG
[Ensembl]
¡û
>C131019644
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
180030
180110
+
Leu
TAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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