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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225035 (69 seq.)
>W1711176112
LWFE01000127
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
1092
1168
+
Met
CAT
[ENA]
¡û
>W1711176117
LWFE01000291
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
13003
13079
+
Met
CAT
[ENA]
¡û
>W1711176426
LWFJ01001154
Gammaproteobacteria
Oleiphilus sp. HI0068 [LWFJ]
1062
986
-
Met
CAT
[ENA]
¡û
>W1711176519
LWFK01001999
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
680
604
-
Met
CAT
[ENA]
¡û
>W1711176522
LWFK01002084
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
27731
27807
+
Met
CAT
[ENA]
¡û
>W1711176617
LWFM01000948
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
2069
1993
-
Met
CAT
[ENA]
¡û
>W1711176957
LWFS01000036
Gammaproteobacteria
Oleiphilus sp. HI0078 [LWFS]
295
219
-
Met
CAT
[ENA]
¡û
>W1711177133
LWFV01001918
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
5
81
+
Met
CAT
[ENA]
¡û
>W1711177149
LWFV01002396
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
116
40
-
Met
CAT
[ENA]
¡û
>W1711177308
LWFY01002192
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
466
542
+
Met
CAT
[ENA]
¡û
>W1711177323
LWFY01002808
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
2513
2589
+
Met
CAT
[ENA]
¡û
>W1711177379
LWFZ01001413
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
19184
19260
+
Met
CAT
[ENA]
¡û
>W1711177410
LWGA01000732
Gammaproteobacteria
Oleiphilus sp. HI0117 [LWGA]
8953
9029
+
Met
CAT
[ENA]
¡û
>W1711177682
LWGE01000254
Gammaproteobacteria
Oleiphilus sp. HI0123 [LWGE]
278
354
+
Met
CAT
[ENA]
¡û
>W1711177758
LWGF01000791
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
66089
66165
+
Met
CAT
[ENA]
¡û
>W1711177791
LWGG01000610
Gammaproteobacteria
Oleiphilus sp. HI0128 [LWGG]
49559
49483
-
Met
CAT
[ENA]
¡û
>W131213677
ATTE01000001
Gammaproteobacteria
Leucothrix mucor DSM 2157 [ATTE]
2710234
2710158
-
Met
CAT
[ENA]
¡û
>w016588
AAQH01000004
Gammaproteobacteria
Bermanella marisrubri RED65 [AAQH]
77137
77215
+
Met
CAT
[ENA]
¡û
>WENV180359217
OBNR01018205
[OBNR] marine metagenome; Seawater_00002010_00002149
329
405
+
Met
CAT
[ENA]
¡û
>WENV181322473
OFKR01016599
[OFKR] marine metagenome; sea ice
189
113
-
Met
CAT
[ENA]
¡û
>WENV181322750
OFKU01008320
[OFKU] marine metagenome; sea ice
246
322
+
Met
CAT
[ENA]
¡û
>WENV181385844
OFRK01021604
[OFRK] marine metagenome; sea ice
396
320
-
Met
CAT
[ENA]
¡û
>WENV182566167
OJEJ01000335
[OJEJ] seawater metagenome; Sea water
2730
2654
-
Met
CAT
[ENA]
¡û
>WENV182575514
OJFV01000017
[OJFV] seawater metagenome; Sea water
113740
113664
-
Met
CAT
[ENA]
¡û
>WENV183056696
OLHJ01005047
[OLHJ] seawater metagenome; Sea water
117
193
+
Met
CAT
[ENA]
¡û
>WENV183056823
OLHJ01025817
[OLHJ] seawater metagenome; Sea water
155
79
-
Met
CAT
[ENA]
¡û
>WENV183616885
OOEE01007080
[OOEE] marine metagenome; sea ice
1104
1180
+
Met
CAT
[ENA]
¡û
>WENV183617494
OOEG01002065
[OOEG] marine metagenome; sea ice
1944
2020
+
Met
CAT
[ENA]
¡û
>WENV183623309
OOFX01068992
[OOFX] marine metagenome; sea ice
175
99
-
Met
CAT
[ENA]
¡û
>WENV183624314
OOGD01000873
[OOGD] marine metagenome; sea ice
4806
4882
+
Met
CAT
[ENA]
¡û
>WENV183624665
OOGE01000266
[OOGE] marine metagenome; sea ice
3273
3349
+
Met
CAT
[ENA]
¡û
>WENV183628515
OOGO01000245
[OOGO] marine metagenome; sea ice
323
247
-
Met
CAT
[ENA]
¡û
>WENV183631141
OOGU01040381
[OOGU] marine metagenome; sea ice
432
356
-
Met
CAT
[ENA]
¡û
>WENV183705225
PDWI01001243
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
28725
28801
+
Met
CAT
[ENA]
¡û
>WENV170298875
CESF01309824
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2509
2585
+
Met
CAT
[ENA]
¡û
>WENV170780244
MAAA01023275
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
73
149
+
Met
CAT
[ENA]
¡û
>WENV170921670
MDTG01018341
[MDTG] marine metagenome; seawater
298
222
-
Met
CAT
[ENA]
¡û
>W141777038
JOMR01000001
Gammaproteobacteria
Thiomicrospira pelophila DSM 1534 [JOMR]
1765325
1765249
-
Met
CAT
[ENA]
¡û
>C151016218
CP007030
Gammaproteobacteria
Thiomicrospira aerophila AL3 [CP007030]
1762302
1762226
-
Met
CAT
[Ensembl]
¡û
>W2011970839
VCBC01000007
Gammaproteobacteria
Thalassotalea litorea MCCC 1K03283 [VCBC]
90410
90334
-
Met
CAT
[ENA]
¡û
>SRA1052487
SRR035098.214111
454 Sequencing (SRP001819)
377
301
-
Met
CAT
[SRA]
>C231120459
CP070959
Gammaproteobacteria
Thiomicrospira microaerophila BDL05 [CP070959]
2053077
2053001
-
Met
CAT
-
¡û
>C231365320
CP096017
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12638 [CP096017]
1410599
1410675
+
Met
CAT
-
¡û
>C231365372
CP096018
Gammaproteobacteria
Alkalimarinus sp. SCSIO 12817 [CP096018]
1410897
1410973
+
Met
CAT
-
¡û
>C231437868
CP101527
Gammaproteobacteria
Alkalimarinus sediminis FA028 [CP101527]
3176116
3176192
+
Met
CAT
-
¡û
>C241149233
CP051183
Gammaproteobacteria
Bermanella marisrubri RED65 [CP051183]
535104
535180
+
Met
CAT
-
¡û
>C11122541
CP002776
Gammaproteobacteria
Thiomicrospira cyclica ALM1 [CP002776]
1559767
1559691
-
Met
CAT
[Ensembl]
¡û
>W1511534000
JYNN01000002
Gammaproteobacteria
Thiomicrospira microaerophila ASL8-2 [JYNN]
35298
35222
-
Met
CAT
[ENA]
¡û
>W11178548
AGFA01000007
Gammaproteobacteria
Thiomicrospira aerophila AL3 [AGFA]
155563
155639
+
Met
CAT
[ENA]
¡û
>W1610984069
LWEY01001744
Gammaproteobacteria
Oleiphilus sp. HI0043 [LWEY]
4593
4517
-
Met
CAT
[ENA]
¡û
>W1610984210
LWFB01001224
Gammaproteobacteria
Oleiphilus sp. HI0050 [LWFB]
3199
3123
-
Met
CAT
[ENA]
¡û
>W1610984425
LWFE01000127
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
1092
1168
+
Met
CAT
[ENA]
¡û
>W1610984430
LWFE01000291
Gammaproteobacteria
Oleiphilus sp. HI0061 [LWFE]
13003
13079
+
Met
CAT
[ENA]
¡û
>W1610984739
LWFJ01001154
Gammaproteobacteria
Oleiphilus sp. HI0068 [LWFJ]
1062
986
-
Met
CAT
[ENA]
¡û
>W1610984832
LWFK01001999
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
680
604
-
Met
CAT
[ENA]
¡û
>W1610984835
LWFK01002084
Gammaproteobacteria
Oleiphilus sp. HI0069 [LWFK]
27731
27807
+
Met
CAT
[ENA]
¡û
>W1610984930
LWFM01000948
Gammaproteobacteria
Oleiphilus sp. HI0072 [LWFM]
2069
1993
-
Met
CAT
[ENA]
¡û
>W1610985270
LWFS01000036
Gammaproteobacteria
Oleiphilus sp. HI0078 [LWFS]
295
219
-
Met
CAT
[ENA]
¡û
>W1610985446
LWFV01001918
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
5
81
+
Met
CAT
[ENA]
¡û
>W1610985462
LWFV01002396
Gammaproteobacteria
Oleiphilus sp. HI0081 [LWFV]
116
40
-
Met
CAT
[ENA]
¡û
>W1610985621
LWFY01002192
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
466
542
+
Met
CAT
[ENA]
¡û
>W1610985636
LWFY01002808
Gammaproteobacteria
Oleiphilus sp. HI0085 [LWFY]
2513
2589
+
Met
CAT
[ENA]
¡û
>W1610985692
LWFZ01001413
Gammaproteobacteria
Oleiphilus sp. HI0086 [LWFZ]
19184
19260
+
Met
CAT
[ENA]
¡û
>W1610985723
LWGA01000732
Gammaproteobacteria
Oleiphilus sp. HI0117 [LWGA]
8953
9029
+
Met
CAT
[ENA]
¡û
>W1610985995
LWGE01000254
Gammaproteobacteria
Oleiphilus sp. HI0123 [LWGE]
278
354
+
Met
CAT
[ENA]
¡û
>W1610986071
LWGF01000791
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
66089
66165
+
Met
CAT
[ENA]
¡û
>W1610986104
LWGG01000610
Gammaproteobacteria
Oleiphilus sp. HI0128 [LWGG]
49559
49483
-
Met
CAT
[ENA]
¡û
>W1610986296
LWGJ01001592
Gammaproteobacteria
Oleiphilus sp. HI0132 [LWGJ]
4697
4621
-
Met
CAT
[ENA]
¡û
>W1710575169
FOYY01000003
Gammaproteobacteria
Thiomicrospira sp. ALE5 ALE5 [FOYY]
980236
980160
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK